| fixed Makefile.PL, added more docs to Abstract.pm and SwissPfam.pm etc.... |
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about 25 years ago
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| Added README file for Bio/Tools/Blast. Fixed Webblast.pm so it checks for LWP loading. |
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about 25 years ago
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| Updated docs. Fixed a few minor nuisances (gratuitous warnings about can't find database name, etc. |
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about 25 years ago
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| Added check for LWP in Makefile.PL. Updated version number to 0.05 |
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about 25 years ago
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| Updated blast_config.pl to support new options for Webblast.pm. Some cleaning up of other scripts and better naming. |
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about 25 years ago
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| fixed Ace.pm with lincoln |
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about 25 years ago
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| added in Ace stuff |
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about 25 years ago
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| Incorporated changes submitted by Ross Crowhurst. Uses LWP; no longer uses postclient.pl. |
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about 25 years ago
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| Fixed $fh->eof() calls to eof $fh - now it all works with \*STDIN sorta filehandles as well as true FileHandle/IO::File typeof filehandles. |
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about 25 years ago
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| Fixes in Blast.pm: fixed bug that caused the ultimate hit to be missed (reported by Richard Copley). Also changed self->{'_get_stats'} to Blast->{'_get_stats'}. Touched up some docs. |
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about 25 years ago
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| Added AUTOLOAD subroutine to pass along calls to underlying Seq.pm object. Also now we change the desc() to tack on our uniqueness signature. |
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about 25 years ago
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| fixes to IUPAC |
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about 25 years ago
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| Added the IUPAC.pm to Bio::Tools Its scalable, works for both nucleotide and amino acid sequences, it streams like SeqIO. What else could you want? |
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about 25 years ago
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| *** empty log message *** |
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about 25 years ago
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| *** empty log message *** |
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about 25 years ago
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| *** empty log message *** |
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about 25 years ago
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| *** empty log message *** |
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about 25 years ago
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| fixed out stuff... |
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about 25 years ago
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| got index stuff to work |
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about 25 years ago
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| Completed implementation of fetch method |
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about 25 years ago
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| added swisspfam stuff to manifest and added more comments to bpfetch.pl |
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about 25 years ago
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| Beefed up SimpleAlign tests for Pfam format |
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about 25 years ago
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| Beefed up SimpleAlign tests for Pfam format |
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about 25 years ago
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| Added bpfetch stuff and bpindex |
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about 25 years ago
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| Small bug fixes plus two new methods (percentage_identity, read_Prodom) |
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about 25 years ago
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| Fixed some bugs in Blast::hits() and num_hits(). Tracked the parsing memory usage problem to the use of -signif criteria but haven't figured out *why* this causes the parser to eat memory. Updated docs in Blast.pm a bit. |
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about 25 years ago
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| taste_file() is now only performed on uncompressed files, NOT on STDIN or on filehandles produced by gzip -cd (can't seek 0 on these after tasting. Some docs added/updated. |
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about 25 years ago
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| Updating for use with the new modules. Mainly some comments added and removed the old parse.pl and parse_stream.pl, which are being replaced by parse_blast.pl |
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about 25 years ago
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| changed manifest file for info |
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about 25 years ago
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| Removing whitespace from enzyme name when making standard enzymes. |
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about 25 years ago
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