BioPerl

Settings | Report Duplicate

22

I Use This!

Very Low Activity

Commits : Listings

Analyzed about 18 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Apr 27, 2023 — Apr 27, 2024 Showing page 583 of 584 Search / Filter on:
Added parse_genbank to deal with individual sequence files coming from an Entrez query.	amackey	More...				about 25 years ago
This is the GenBank.pm module, uses Bio::Tools::WWW and LWP::Simple qw(get) to retrieve nucleotide/protein entries (in genbank format) from GenBank, via Entrez. Returns a Seq object.	amackey	More...				about 25 years ago
Added the GenBank.pm DB module for retrieving nucleotide and protein sequences from GenBank (uses Tools::WWW and LWP:Simple qw(get)) and currently returns a Seq object (perhaps an EMBL-SeqIO parsed Entry/?? object soon).	amackey	More...				about 25 years ago
added in SeqFeature	birney	More...				about 25 years ago
added in SeqFeature	birney	More...				about 25 years ago
added in SeqIO system	birney	More...				about 25 years ago
better lisp	birney	More...				about 25 years ago
Removed comment about Bio::Tools::Sigcleave because I added it to the 0-04-bug branch.	dag	More...				about 25 years ago
POD tweak.	dag	More...				about 25 years ago
Added Bio::Tools::Sigcleave to the 0.04.2 listing	dag	More...				about 25 years ago
Finished validation test on 405 Swissprot sequences. Adjusted POD to mention this.	dag	More...				about 25 years ago
Put old-school method for calculating weight table back in. The 'new' way was not generating accurate results. Oh well,at the expense of some speed we get more accurate scores.	dag	More...				about 25 years ago
Used real swissprot protein for test case.	dag	More...				about 25 years ago
Added platform info for the PowerMac 7600 running LinuxPPC OS	dag	More...				about 25 years ago
Fixed "1..3" to "1..4" line to reflect that there are actually 4 tests in this script	dag	More...				about 25 years ago
Added to POD docs	dag	More...				about 25 years ago
Tweaks to get by 'make test' with out warning messages	dag	More...				about 25 years ago
Fixed some stuff so that warnings go away during 'make test'	dag	More...				about 25 years ago
Made 8 tests for Sigcleave.pm	dag	More...				about 25 years ago
Added t/Sigcleave.t	dag	More...				about 25 years ago
Added test script for Sigcleave.pm	dag	More...				about 25 years ago
Added Bio/Tools/Sigcleave.pm listing to manifest	dag	More...				about 25 years ago
Adding to repository. Sigcleave.pm --> egcg sigcleave emulation code	dag	More...				about 25 years ago
added trunc function and exceptions to t/Seq.t	birney	More...				over 25 years ago
Added __END__ token to permit compilation.	Steve Chervitz Trutane as sac	More...				over 25 years ago
Changed reverse() calls to CORE::reverse() to clear up ambiguity.	Steve Chervitz Trutane as sac	More...				over 25 years ago
modifications to Sbjct.pm and HSP.pm frac_identical() and frac_conserved() lead to more correct output.	Steve Chervitz Trutane as sac	More...				over 25 years ago
added abstract database class	birney	More...				over 25 years ago
added SearchDist	birney	More...				over 25 years ago
Fixed pod bug (=end was used intead of =back to finish a =over section).	Steve Chervitz Trutane as sac	More...				over 25 years ago

←
1
2
…
576
577
578
579
580
581
582
583
584
→