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Commits : Listings

Analyzed about 22 hours ago. based on code collected 1 day ago.
Apr 22, 2023 — Apr 22, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Config::Any is not used so removing; this was added to potentially tweak parsing and feature building but was not implemented
Chris Fields
More... about 4 years ago
EOL changes
Chris Fields
More... over 5 years ago
skip some tests
Chris Fields
More... over 5 years ago
bump version
Chris Fields
More... over 5 years ago
t/Annotation.t: add test to Bio::SeqFeature::Annotated
carandraug
as Carnë Draug
More... over 5 years ago
Remove POD boilerplate to use Pod::Weaver and we release with Dist::Zilla
carandraug
as Carnë Draug
More... over 9 years ago
maint: update dist.ini to make use of Bioperl's pluginbundle
carandraug
as Carnë Draug
More... over 9 years ago
Remove Build.PL and MANIFEST which are generated automatically by dist zilla
carandraug
as Carnë Draug
More... over 9 years ago
Move programs from "scripts/" to "bin/" which is Dist::Zilla::Plugin::ExecDir default and also a lot more common everywhere else. Also drop file extension.
carandraug
as Carnë Draug
More... over 9 years ago
Merge branch 'master' of github.com:bioperl/Bio-FeatureIO
Chris Fields
More... over 9 years ago
remove bundled Test code, will require Test::Most
Chris Fields
More... over 9 years ago
Updated MANIFEST and .gitignore
Francisco J. Ossandon
More... over 9 years ago
defunkify links
Chris Fields
More... over 9 years ago
Markdown-ize README
Chris Fields
More... over 9 years ago
allow SF::Lite via -feature_class
Chris Fields
More... about 10 years ago
gff.pm: Optimized the Windows ending bug fix by moving the code from "next_dataset" to "_initialize", so is only run once per file and then buffered on $self. The $self->{termination_length} stores the calculated length of the line ending characters. Since now the value is buffered, I removed the line endings just after _readline, so the multiple chomps are not needed.
Francisco J. Ossandon
More... over 10 years ago
Moved "use" statements into BEGIN blocks in Feature.t, faldo.t, gff3.t and gtf.t tests files, and added number of expected tests where missing
Francisco J. Ossandon
More... over 10 years ago
FeatureIO.t: Fixed several failing tests that were using wrong arguments on the methods (maybe attribute names that were changed in the past), or were expecting wrong returns. Now in linux all tests pass, but in windows Bio::GFF3::LowLevel fails to install, so can't test yet
Francisco J. Ossandon
More... over 10 years ago
Annotated.t: Fixed tests count
Francisco J. Ossandon
More... over 10 years ago
Bio::FeatureIO::gff.pm: Using bare equality without explicit variable in "directive" caused a bug where "$directive = '#'" matched "elsif ('genome-build') {", instead of the proper conditional. Adding explicit "$_ eq" in the conditionals fixed it.
Francisco J. Ossandon
More... over 10 years ago
Bio::FeatureIO::gff.pm: Windows compatibility fix, added a correction to byte positions for ghost '\r'.
Francisco J. Ossandon
More... over 10 years ago
GenericFeatureHandler: Fixed wrong key name for filehandle in $self
Francisco J. Ossandon
More... over 10 years ago
Merge pull request #3 from cmungall/master
Chris Mungall
More... over 10 years ago
Merge remote-tracking branch 'upstream/master'
Chris Mungall
More... over 10 years ago
Added scripts for translating collections of SeqFeatures (e.g. gff, faldo, ..)
Chris Mungall
More... over 10 years ago
Removed cruft. Added docs
Chris Mungall
More... over 10 years ago
Merge pull request #2 from cmungall/master
Chris Fields
More... almost 11 years ago
injected location, graph is now feature->loc->{b,e}
Chris Mungall
More... almost 11 years ago
fixed test
Chris Mungall
More... almost 11 years ago
Attribute mapping, parents, Ontology_term all handled in faldo output
Chris Mungall
More... almost 11 years ago