I

ITAG

Settings | Report Duplicate

0

I Use This!

Inactive

Commits : Listings

Analyzed about 6 hours ago. based on code collected about 8 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
May 02, 2023 — May 02, 2024 Showing page 7 of 8 Search / Filter on:
itag release generation, added filtering for control chars	Rob Buels	More...				about 14 years ago
removed lingering munge_identifiers function	Rob Buels	More...				about 14 years ago
removed ad-hoc identifier munging from itag release script, will do it in post-processing	Rob Buels	More...				about 14 years ago
changed itag release generator stat collection to not use Bio::FeatureIO::gff, just too slow	Rob Buels	More...				about 14 years ago
some more refactoring of the itag release generator, finally starting to tame the beast. see, things like this script are what happens when i try to write something quick and dirty. added a -S switch for stat collection debugging.	Rob Buels	More...				about 14 years ago
itag release generator, tweaks to progress output	Rob Buels	More...				about 14 years ago
itag release generator, cleaning up some commented-out code	Rob Buels	More...				about 14 years ago
itag release generation, added progress messages to dump step	Rob Buels	More...				about 14 years ago
itag release generator, added progress messages to stats collection	Rob Buels	More...				about 14 years ago
added stats to itag release generation for avg gene length, genes with ontology terms, and number of unique ontology terms	Rob Buels	More...				about 14 years ago
sigh, another bugfix for itag release go parsing	Rob Buels	More...				about 14 years ago
bugfix to itag release gen GO parsing, added lazy db connecting	Rob Buels	More...				about 14 years ago
itag generator - munge identifiers by reference, for speed	Rob Buels	More...				about 14 years ago
added go annotations to itag release generator. in gbrowse conf, moved functional descriptions and go terms to be on mrna features, since different mrnas could theoretically have different functions	Rob Buels	More...				about 14 years ago
renaming itag release genomic fasta file to take "contigs" out of the name	Rob Buels	More...				about 14 years ago
corrected itag protein gbrowse peptides track	Rob Buels	More...				about 14 years ago
bugfix to release generator id munging	Rob Buels	More...				about 14 years ago
lots of cleanup and refactoring of itag release generator	Rob Buels	More...				about 14 years ago
Directory for the Cview component. A Cview A Cview/lib A Cview/lib/CXGN	Lukas Mueller	More...				about 14 years ago
temporarily added identifier munging for scaffold12345 => SL1.00sc12345	Rob Buels	More...				about 14 years ago
itag release generator bugfix	Rob Buels	More...				about 14 years ago
lots of small changes and enhancements to itag release-building code. some changes necessary to properly support generic-scaffold genomic reference sequences. formatting tweaks and enhancements.	Rob Buels	More...				about 14 years ago
switched name of tomato_contig identifier namespace to tomato_bac_contig	Rob Buels	More...				about 14 years ago
very subtle bugfix to itag_generate_release	Rob Buels	More...				about 14 years ago
less dependence on CXGN::ITAG::Config, on the way to removing it	Rob Buels	More...				about 14 years ago
liberalizing ITAG release names, can now by any string. removed redundant _parse_release_dirname in CXGN::ITAG::Release. also, previous commit liberalized parsing of release names in CXGN::ITAG::Tools	Rob Buels	More...				about 14 years ago
removed unused CXGN::ITAG::Tools::assemble_release_filename	Rob Buels	More...				about 14 years ago
itag release generator, commify_number has moved to CXGN::Tools::Text	Rob Buels	More...				about 14 years ago
removed ITAG base directory defaults, making base directory being a required option all the way through	Rob Buels	More...				about 14 years ago
removed default pipeline base for opening ITAG pipelines	Rob Buels	More...				about 14 years ago

←
1
2
3
4
5
6
7
8
→