0
I Use This!
Low Activity
Analyzed 5 days ago. based on code collected 5 days ago.

Project Summary

OverviewBio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.

It is currently distributed as platform independent source code under the GPL version 2 license. Please visit the Main Bio3d Site for further information, Installation instructions, Quick start guide and full Documentation.

FeaturesThe ability to read and write structure, sequence and dynamics trajectory data.

Perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis and principal component analysis of structure data.

Perform conservation analysis of sequence and structural data.

In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.

CitationBio3D: An R package for the comparative analysis of protein structures. Grant, Rodrigues, Elsawy, Mccammon, Caves, (2006) Bioinformatics 22, 2695-2696 FULL TEXT

Tags

bioinformatics protein_sequence protein_structure r

In a Nutshell, bio3d...

GNU General Public License v2.0 or later
Permitted

Commercial Use

Modify

Distribute

Place Warranty

Forbidden

Sub-License

Hold Liable

Required

Include Copyright

Include License

Distribute Original

Disclose Source

State Changes

These details are provided for information only. No information here is legal advice and should not be used as such.

All Licenses

This Project has No vulnerabilities Reported Against it

Did You Know...

  • ...
    Black Duck offers a free trial so you can discover if there are open source vulnerabilities in your code
  • ...
    you can subscribe to e-mail newsletters to receive update from the Open Hub blog
  • ...
    65% of companies leverage OSS to speed application development in 2016
  • ...
    check out hot projects on the Open Hub

Languages

Languages?height=75&width=75
R
95%
3 Other
5%

30 Day Summary

Sep 16 2018 — Oct 16 2018

12 Month Summary

Oct 16 2017 — Oct 16 2018
  • 46 Commits
    Down -94 (67%) from previous 12 months
  • 3 Contributors
    Down -3 (50%) from previous 12 months