bio3d

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Analyzed about 19 hours ago. based on code collected 1 day ago.

Project Summary

OverviewBio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.

It is currently distributed as platform independent source code under the GPL version 2 license. Please visit the Main Bio3d Site for further information, Installation instructions, Quick start guide and full Documentation.

FeaturesThe ability to read and write structure, sequence and dynamics trajectory data.

Perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis and principal component analysis of structure data.

Perform conservation analysis of sequence and structural data.

In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.

CitationBio3D: An R package for the comparative analysis of protein structures. Grant, Rodrigues, Elsawy, Mccammon, Caves, (2006) Bioinformatics 22, 2695-2696 FULL TEXT

In a Nutshell, bio3d...

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has had 2,198 commits made by 26 contributors
representing 24,485 lines of code
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is mostly written in R
with an average number of source code comments
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has a well established, mature codebase
maintained by a small development team
with decreasing Y-O-Y commits
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took an estimated 6 years of effort (COCOMO model)
starting with its first commit in October, 2012
ending with its most recent commit about 1 month ago

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https://bitbucket.org/Grantlab/b...

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