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Project Summary

OverviewBio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.

It is currently distributed as platform independent source code under the GPL version 2 license. Please visit the Main Bio3d Site for further information, Installation instructions, Quick start guide and full Documentation.

FeaturesThe ability to read and write structure, sequence and dynamics trajectory data.

Perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis and principal component analysis of structure data.

Perform conservation analysis of sequence and structural data.

In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.

CitationBio3D: An R package for the comparative analysis of protein structures. Grant, Rodrigues, Elsawy, Mccammon, Caves, (2006) Bioinformatics 22, 2695-2696 FULL TEXT

Tags

bioinformatics protein_sequence protein_structure r

GNU General Public License v2.0 or later
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These details are provided for information only. No information here is legal advice and should not be used as such.

Project Security

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Languages

Languages?height=75&width=75
R
95%
3 Other
5%

30 Day Summary

Nov 6 2021 — Dec 6 2021

12 Month Summary

Dec 6 2020 — Dec 6 2021
  • 43 Commits
    Up + 14 (48%) from previous 12 months
  • 3 Contributors
    Down -1 (25%) from previous 12 months