0
I Use This!
Very Low Activity
Analyzed 2 days ago. based on code collected 2 days ago.

Project Summary

OverviewBio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.

It is currently distributed as platform independent source code under the GPL version 2 license. Please visit the Main Bio3d Site for further information, Installation instructions, Quick start guide and full Documentation.

FeaturesThe ability to read and write structure, sequence and dynamics trajectory data.

Perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis and principal component analysis of structure data.

Perform conservation analysis of sequence and structural data.

In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.

CitationBio3D: An R package for the comparative analysis of protein structures. Grant, Rodrigues, Elsawy, Mccammon, Caves, (2006) Bioinformatics 22, 2695-2696 FULL TEXT

Tags

bioinformatics protein_sequence protein_structure r

GNU General Public License v2.0 or later
Permitted

Commercial Use

Modify

Distribute

Place Warranty

Forbidden

Sub-License

Hold Liable

Required

Distribute Original

Disclose Source

Include Copyright

State Changes

Include License

These details are provided for information only. No information here is legal advice and should not be used as such.

All Licenses

This Project has No vulnerabilities Reported Against it

Did You Know...

  • ...
    nearly 1 in 3 companies have no process for identifying, tracking, or remediating known open source vulnerabilities
  • ...
    learn about Open Hub updates and features on the Open Hub blog
  • ...
    there are over 3,000 projects on the Open Hub with security vulnerabilities reported against them
  • ...
    by exploring contributors within projects, you can view details on every commit they have made to that project

Languages

Languages?height=75&width=75
R
95%
3 Other
5%

30 Day Summary

Jul 16 2019 — Aug 15 2019

12 Month Summary

Aug 15 2018 — Aug 15 2019
  • 16 Commits
    Down -63 (79%) from previous 12 months
  • 2 Contributors
    Down -1 (33%) from previous 12 months