BioFSharp

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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 22, 2024 — Aug 22, 2025 Showing page 7 of 22 Search / Filter on:
Add classic DPPOP scoring functions and generic scoreProteinsAgainstProteome function to DPPOP Prediction	Kevin Schneider	More...				over 6 years ago
Add z normalization of features by costom norm vector or premade chlamy/yeast vectors	Kevin Schneider	More...				over 6 years ago
fix wrong calculation of features pI and cleavage score, add working prediction function to script	Kevin Schneider	More...				over 6 years ago
Add multiple tests for dppop, bug in classification	Kevin Schneider	More...				over 6 years ago
Add helper functions for input/output of prediction in dppop	Kevin Schneider	More...				over 6 years ago
Add embedded ressource loading for models to the dppop prediction module	Kevin Schneider	More...				over 6 years ago
Add model files used by the dppop web API as embedded resources to BioFSharp.ML	Kevin Schneider	More...				over 6 years ago
Add scoreBy function to Prediction module in dppop	Kevin Schneider	More...				over 6 years ago
Add functions and helpers to get all peptide features concerned for classification in dppop	Kevin Schneider	More...				over 6 years ago
Add getPhysicoHemical properties to dppop classification module	Kevin Schneider	More...				over 6 years ago
Add digestion efficiency calculation to dppop classification Refactor existing functions and supply generic counterparts	Kevin Schneider	More...				over 6 years ago
Add function to get distinct peptides from fasta input to classification module in dppop (BioFSharp.ML)	Kevin Schneider	More...				over 6 years ago
Add CNTKExtensions and DPPOP namespaces to BioFSharp.ML	Kevin Schneider	More...				over 6 years ago
Add CNTK load script to BioFSharp.ML to ensure correct native DLL loading	Kevin Schneider	More...				over 6 years ago
Add BioFSharp.ML project and CNTK dependency	Kevin Schneider	More...				over 6 years ago
fix typo in hmmer comment	Kevin Schneider	More...				over 6 years ago
Add hmmemit API to HMMER biocontainer API	Kevin Schneider	More...				over 6 years ago
Add hmmpress and hmmconvert APIs to HMMER biocontainer API	Kevin Schneider	More...				over 6 years ago
Add HMMscan API for HMMER biocontainer API	Kevin Schneider	More...				over 6 years ago
Add HMMsearch API to HMMER biocontainer API	Kevin Schneider	More...				over 6 years ago
Add HMMER API library for HMMER biocontainer. - Add hmmbuild API to HMMER biocontainer API	Kevin Schneider	More...				over 6 years ago
Add API for clustal-omega biocontainer	Kevin Schneider	More...				over 6 years ago
Bump version to 0.0.14	Kevin Schneider	More...				over 6 years ago
Bump version to 0.014	Kevin Schneider	More...				over 6 years ago
Remove print debugging artifacts	Kevin Schneider	More...				over 6 years ago
Add useful prints to blast execution functions in blast docker	Kevin Schneider	More...				over 6 years ago
Add biocontainers/blast docker API acces: - Add windows/unix path conversions and subpath matching to MounInto in BioContainer.fs - Add execReturnAsync (returns stdout of docker container) and execAsync (redirects stdout/stderr of container) to BioContainer.fs - Add Blast parameter wrapping and command generation for blast container	Kevin Schneider	More...				over 6 years ago
Add MountInfo in BcContext	Timo Mühlhaus	More...				over 6 years ago
Merge branch 'developer' of https://github.com/CSBiology/BioFSharp into developer	Timo Mühlhaus	More...				over 6 years ago
Fixed root	Timo Mühlhaus	More...				over 6 years ago

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