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Commits : Listings

Analyzed about 1 hour ago. based on code collected 1 day ago.
Apr 27, 2023 — Apr 27, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Remove Bio::SeqIO support for abi, alf, ctf, exp, pln, and ztr.
carandraug
as Carnë Draug
More... over 5 years ago
Bio::Cluster and Bio::ClusterIO moved to their own separate distribution
carandraug
as Carnë Draug
More... over 5 years ago
Bio::Phenotype::* move what's left of the namespace to its own distribution.
carandraug
as Carnë Draug
More... over 5 years ago
maint: remove no longer used test data files.
carandraug
as Carnë Draug
More... over 5 years ago
Bio::LiveSeq::* move whole namespace to its own distribution.
carandraug
as Carnë Draug
More... over 5 years ago
maint: update gitignore rules
carandraug
as Carnë Draug
More... over 5 years ago
t/AlignIO/AlignIO.t: fix number of tests in plan (fixup c523e6bed866)
carandraug
as Carnë Draug
More... over 5 years ago
t/Annotation/Annotation.t: remove test for Bio::SeqFeature::Annotated
carandraug
as Carnë Draug
More... over 5 years ago
Bio/Tools/Run/Phylo/PhyloBase.pm: bring base class from BioPerl-Run.
carandraug
as Carnë Draug
More... over 5 years ago
lib/Bio/Tools/Run/Phylo/PhyloBase.pm: move to the BioPerl distribution.
carandraug
as Carnë Draug
More... over 5 years ago
Bio/Tools/Run/Phylo/Gumby.pm: move to its own distribution
carandraug
as Carnë Draug
More... over 5 years ago
Bio/Tools/Phylo/Gumby.pm: move to its own distribution
carandraug
as Carnë Draug
More... over 5 years ago
DB/SeqFeature/Store/berkeleydb3.pm: fix errors so it compiles (issue #284)
carandraug
as Carnë Draug
More... over 5 years ago
Adjust tests indirectly making use of Bio::AlignIO::stockholm (issue #288)
carandraug
as Carnë Draug
More... over 5 years ago
maint: restructure to use Dist::Zilla
carandraug
as Carnë Draug
More... over 5 years ago
bp_process_wormbase: move program to new Bio-DB-Ace distribution
carandraug
as Carnë Draug
More... over 5 years ago
bp_netinstall: remove out of date program
carandraug
as Carnë Draug
More... over 5 years ago
Add modules making use Bio::Ext::Align
Carn�� Draug
More... over 5 years ago
Move modules dependent on Bio::Ext::Align into defunct bioperl-ext
carandraug
as Carnë Draug
More... over 5 years ago
Bio::DB::Expression: move to defunct bioperl-microarray
carandraug
as Carnë Draug
More... over 5 years ago
maint: 644 permissions for almost all files
carandraug
as Carnë Draug
More... over 5 years ago
maint: set all source code with utf-8 encoding
carandraug
as Carnë Draug
More... over 5 years ago
maint: remove maintainer out of date files
carandraug
as Carnë Draug
More... over 5 years ago
ide: remove module templates - no longer needed after Pod::Weaver
carandraug
as Carnë Draug
More... over 5 years ago
ide/bioperl-mode: into its own repository to be developed separately
carandraug
as Carnë Draug
More... over 5 years ago
maint: remove bioperl-mode release tarballs from version control
carandraug
as Carnë Draug
More... over 5 years ago
Bio::Index::Abstract->_type_and_version: check type before version (issue #281)
carandraug
as Carnë Draug
More... over 5 years ago
t/LocalDB/Index/BlastTable.t: use tempdir to avoid clashes in parallel (issue #281)
carandraug
as Carnë Draug
More... over 5 years ago
t/LocalDB/Index/Blast.t: create test tempfiles within a tempdir (issue #281)
carandraug
as Carnë Draug
More... over 5 years ago
maint: remove unused test data files
carandraug
as Carnë Draug
More... over 5 years ago