13
I Use This!
Moderate Activity

Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Sep 17, 2024 — Sep 17, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Update black etc in pre-commit More... over 1 year ago
Fix typing on `strictly_equals` (#4653) More... over 1 year ago
Add strict equality method to PDB model classes (#4593) More... over 1 year ago
Add a writer to Bio.Blast (#4647)
Michiel de Hoon
as mdehoon
More... over 1 year ago
Add biomoltrans to pdb header parsing and mmtf writing (#4613) More... over 1 year ago
Static typing for Bio.PDB (#4641) More... over 1 year ago
changes requested in https://github.com/biopython/biopython/pull/4638#discussion_r1506095297 More... over 1 year ago
closes #4604 More... over 1 year ago
remove code duplication More... over 1 year ago
address comments More... over 1 year ago
news item More... over 1 year ago
closes #4611 More... over 1 year ago
Downgrade exception to warning in case of entity id duplication. (#4623) More... over 1 year ago
Add a PDBML (PDB XML) parser (#4591) More... over 1 year ago
Make SeqIO's import of MultipleSeqAlignment lazy. More... over 1 year ago
remove stray imports (#4626)
Michiel de Hoon
as mdehoon
More... over 1 year ago
Bio.Blast consistent with Bio.SearchIO (#4617)
Michiel de Hoon
as mdehoon
More... over 1 year ago
add current DTD for clinvar esummary (#4619) More... over 1 year ago
Dual license Bio/Align/analysis.py More... over 1 year ago
BSD dual license Bio/codonalign/__init__.py More... over 1 year ago
BSD dual license Bio/codonalign/codonalignment.py More... over 1 year ago
BSD dual license Bio/codonalign/codonseq.py More... over 1 year ago
More BSD dual licensing progress for NEWS More... over 1 year ago
Dual license Bio/motifs/jaspar/__init__.py More... over 1 year ago
Dual license Bio/motifs/jaspar/db.py More... over 1 year ago
added my name to the contributors More... over 1 year ago
ran black on test_cellosaurus.py More... over 1 year ago
Changed rst table More... over 1 year ago
Updated the cellosaurus tests: - text files updated so that the entries look like the entries of the latest cellosaurus version (02-2024) - test__str__ was extended by AG and DT fields More... over 1 year ago
Now also parsing the age (AG) and date (DT) fields. Also fixed a "bug" that would never occur since the fields just occur once per entry. In this bug, the reader would try to append to a field defined as string, which is not possible as append can just be called on lists. More... over 1 year ago