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Inactive
Commits
: Listings
Analyzed
about 10 hours
ago. based on code collected
1 day
ago.
Mar 27, 2023 — Mar 27, 2024
Showing page 1 of 8
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Date
Merge pull request #13 from raphaelss/description
Keith James
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almost 9 years ago
add author, licence and description (if missing) to asdf files
Raphael Santos
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almost 9 years ago
Added alignment tags from recent versions of Samtools and BWA.
Keith James
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over 10 years ago
Merge pull request #12 from pcostanza/new-alignment-tags
Keith James
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over 10 years ago
Added new alignment tags from recent versions of SAMtools and BWA.
Pascal Costanza
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over 10 years ago
Merge pull request #11 from pcostanza/more-flexible-character-tags
Keith James
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over 10 years ago
When encoding character tags, also accept string designators.
Pascal Costanza
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over 10 years ago
Updated version of deoxybyte-gzip required, thereby relaxing the version requirement for CFFI
Keith James
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about 11 years ago
Set compression level as a property of the bgzf handle
Keith James
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about 11 years ago
Support for additional header fields
Keith James
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about 11 years ago
Added argument checking
Keith James
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about 11 years ago
Updated copyright
Keith James
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about 11 years ago
Removed out of date material
Keith James
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about 11 years ago
Bumped version for change to with-bam API
Keith James
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over 12 years ago
Added prelim tests for uncompressed and padded headers
Keith James
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over 12 years ago
Reverted version number saved in BAM files from 1.4 -> 1.4 because Picard doesn't like it
Keith James
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over 12 years ago
Fixed type declaration of bgzf-pointer
Keith James
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over 12 years ago
Fixed off-by-one error in bgzf-pointer
Keith James
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over 12 years ago
Changed :compress keyword to :compress-header and :null-padding to :pad-header
Keith James
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over 12 years ago
Rationalised use of :compress keyword for header storage
Keith James
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over 12 years ago
Fixed by where >1 reference region was supplied; sort step was missing in region normalisation.
Keith James
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over 12 years ago
Added bgzf stream slot to bgzf error condition
Keith James
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over 12 years ago
Added find-bam-index function.
Keith James
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almost 13 years ago
Make sure temporary BAM files are deleted after testing
Keith James
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almost 13 years ago
Enable stdin/stdout for bgzf
Keith James
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almost 13 years ago
Handle BAM files with missing HD headers when swapping sort order tags
Keith James
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almost 13 years ago
Bug fix; typo introduced in constructor call
Keith James
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almost 13 years ago
Added BAM alignment orphanizer to utilities
Keith James
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almost 13 years ago
Updates for SAM 1.4; template/fragment notation, new tags.
Keith James
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almost 13 years ago
Changed tests to use with-tmp-* macros for cleanup.
Keith James
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almost 13 years ago
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