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Commits : Listings

Analyzed about 10 hours ago. based on code collected 1 day ago.
Mar 27, 2023 — Mar 27, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Merge pull request #13 from raphaelss/description More... almost 9 years ago
add author, licence and description (if missing) to asdf files More... almost 9 years ago
Added alignment tags from recent versions of Samtools and BWA. More... over 10 years ago
Merge pull request #12 from pcostanza/new-alignment-tags More... over 10 years ago
Added new alignment tags from recent versions of SAMtools and BWA. More... over 10 years ago
Merge pull request #11 from pcostanza/more-flexible-character-tags More... over 10 years ago
When encoding character tags, also accept string designators. More... over 10 years ago
Updated version of deoxybyte-gzip required, thereby relaxing the version requirement for CFFI More... about 11 years ago
Set compression level as a property of the bgzf handle More... about 11 years ago
Support for additional header fields More... about 11 years ago
Added argument checking More... about 11 years ago
Updated copyright More... about 11 years ago
Removed out of date material More... about 11 years ago
Bumped version for change to with-bam API More... over 12 years ago
Added prelim tests for uncompressed and padded headers More... over 12 years ago
Reverted version number saved in BAM files from 1.4 -> 1.4 because Picard doesn't like it More... over 12 years ago
Fixed type declaration of bgzf-pointer More... over 12 years ago
Fixed off-by-one error in bgzf-pointer More... over 12 years ago
Changed :compress keyword to :compress-header and :null-padding to :pad-header More... over 12 years ago
Rationalised use of :compress keyword for header storage More... over 12 years ago
Fixed by where >1 reference region was supplied; sort step was missing in region normalisation. More... over 12 years ago
Added bgzf stream slot to bgzf error condition More... over 12 years ago
Added find-bam-index function. More... almost 13 years ago
Make sure temporary BAM files are deleted after testing More... almost 13 years ago
Enable stdin/stdout for bgzf More... almost 13 years ago
Handle BAM files with missing HD headers when swapping sort order tags More... almost 13 years ago
Bug fix; typo introduced in constructor call More... almost 13 years ago
Added BAM alignment orphanizer to utilities More... almost 13 years ago
Updates for SAM 1.4; template/fragment notation, new tags. More... almost 13 years ago
Changed tests to use with-tmp-* macros for cleanup. More... almost 13 years ago