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Commits : Listings

Analyzed about 4 hours ago. based on code collected about 4 hours ago.
Aug 30, 2024 — Aug 30, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Bug fix?: Loading one and the same file form the Effectopedia.org server or as a local file did have the same behavior. The local file had a proper history while the remote file was incomplete and caused null pointer exception. The default data adding was moved in the source at the same position as in the load file. The error is no longer observed but further investigation of the two threads adding to the same datasource shout be performed.
aladjov
More... over 11 years ago
Release update
aladjov
More... over 11 years ago
[no comment]
aladjov
More... over 11 years ago
[no comment]
aladjov
More... over 11 years ago
Setup and jar builds
aladjov
More... over 11 years ago
Bug fix: Some default objects did not get their externalID updated when loading from XML files. The static updateDefaultObjectExternalID method was added to allow updating them form processedIDs.
aladjov
More... over 11 years ago
Delete some test files
aladjov
More... over 11 years ago
stampIDsOffset was introduced in DataSource class to mark the initial StampIDs value before its creation. The new property is used in the HistoricalDS to allow comparison between stampID and externalID
aladjov
More... over 11 years ago
An optimized version of the updateParenthood method was implemented for all classes which have as children another EffectopediaObjects sub object. Before cloning the sub object method checks if the object has the right parent assigned and skips the cloning if this is the case.
aladjov
More... over 11 years ago
UpdateParenhood is creating clones for the default objects which might not be contained in the EffectopediaObjects.defaultObjects hash map since there only one copy per defaultID is kept.
aladjov
More... over 11 years ago
EditHistory now runs with the main Effectopedia file generated from the internal script. The new version has some extra output sections dedicated for further debugging and testing of the release
aladjov
More... over 11 years ago
The major effort in this release was to clean up the problems with the history browsing. Current release is successfully loading a simple example containing one pathway modified in 4 revisions without errors but fails to show the edit history of the Effectopedia main xml file.
aladjov
More... over 11 years ago
BatchProcessor was further expanded and now provides an options variable which determines if the batch should use only embedded reference type objects or all objects. This allows for example to include or not the list of elements in the Pathway class.
aladjov
More... over 11 years ago
Back reference to the DataSource was introduced in EffectopediaObject as a tool to make possible and / or simplify several issues among which is the use of
aladjov
More... over 11 years ago
The new release includes partial Implementation of the revision history navigation.
aladjov
More... over 11 years ago
[no comment]
aladjov
More... about 12 years ago
Bug Fix: Effect editor was updated to scroll component back to the references when new reference line is added.
aladjov
More... about 12 years ago
General warnings cleanup
aladjov
More... about 12 years ago
Some additional adjustments to the NewIndexedGOIM were made so it prevents the MIE from typecycling and yet and do not affect the option to interrupt and then resume pathway building starting from MIE. Another change is that insertion of intermediate effect was reverted back to DownstreamEffect
aladjov
More... about 12 years ago
The PathwayElementTypeCycler along with NewIndexedGIOM was updated to provide more "intelligent" type cycling - when the element is connected to a chemical include MIE in the cycle and excluding AdverseOutcomes from the cycle when the element has outgoing associations.
aladjov
More... about 12 years ago
Some console messages were removed from the output.
aladjov
More... about 12 years ago
Bug Fix: Newly inserted references are editable when the whole object is not in the read only mode.
aladjov
More... about 12 years ago
The user interface of the SystemConsole was further developed and now supports copynig console and error log to the clipboard or sending e-mail using the default desktop application. System console remains hidden until an error occurs.
aladjov
More... about 12 years ago
Bug Fix: the problem of loading links as a segment root or disconnected links was eliminated by assigning default segment.
aladjov
More... about 12 years ago
Disassociate method in the Pathway class was modified to remove the pathwayID form the element's list of PathwayIDs
aladjov
More... over 12 years ago
A cleaned up version of Gil's DNA Intercalation Mediated Cardiomyopathy pathway was added as a script.
aladjov
More... over 12 years ago
[no comment]
aladjov
More... over 12 years ago
BiologicalPerturbation now have a description section and association with the originating biological effect and potential chemical affected from the effect. The user interface has been partially implemented
aladjov
More... over 12 years ago
XMLFile version was updated to 0.936
aladjov
More... over 12 years ago
Bug Fix: The zoom level is reset to default when new information is loaded in the PathwayViewer (ViewUI)
aladjov
More... over 12 years ago