GEMINI_genome_mining

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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Sep 10, 2024 — Sep 10, 2025 Showing page 49 of 82 Search / Filter on:
update doc for impact term changes	udp3f	More...				over 11 years ago
Merge pull request #269 from udp3f/master	Aaron Quinlan	More...				over 11 years ago
synchronize priorities for similar terms	udp3f	More...				over 11 years ago
synchronize impact terms	udp3f	More...				over 11 years ago
Merge pull request #268 from udp3f/master	Aaron Quinlan	More...				over 11 years ago
handle new snpEff impact terms without code break	udp3f	More...				over 11 years ago
handle new snpEff impact terms	udp3f	More...				over 11 years ago
handle keyerror for new snpEff impact terms	udp3f	More...				over 11 years ago
speedup loading for unit tests via --test-mode. Also provide --skip-gene-tables	arq5x	More...				over 11 years ago
Merge branch 'master' of github.com:arq5x/gemini	arq5x	More...				over 11 years ago
don't index until end	arq5x	More...				over 11 years ago
Fix issue with missing __init__.py files that use namespace packages, which setuptools/pip toss away: update to latest ipython-cluster-helper with fix and manually patch for python-graph-core. Thanks to Kie for the report on the mailing list	chapmanb	More...				over 11 years ago
Provide framework to make data files optional with switch to add new ones to avoid large downloads not used by default. Turn off gerp_bp download by default since it's 2/3 of the current download directory and not enabled without a flag	chapmanb	More...				over 11 years ago
Merge pull request #266 from dgaston/master	Aaron Quinlan	More...				over 11 years ago
Added SPLICE_REGION to snpEff effects	Daniel Gaston	More...				over 11 years ago
Ensure mapping quality is a single value. Supports platypus VCF output	chapmanb	More...				over 11 years ago
Avoid issues with numpy 1.7/1.8 discrepency in automated conda installation. Fixes #264	chapmanb	More...				over 11 years ago
Merge branch 'master' of github.com:arq5x/gemini	arq5x	More...				over 11 years ago
merge in a transaction and delay indexing until final db.	arq5x	More...				over 11 years ago
better logging:	arq5x	More...				over 11 years ago
better logging:	arq5x	More...				over 11 years ago
add new indices	arq5x	More...				over 11 years ago
Merge pull request #262 from lbeltrame/add-samples-region	Aaron Quinlan	More...				over 11 years ago
Add --show-samples to the output of gemini region	Luca Beltrame	More...				over 11 years ago
missing file	arq5x	More...				over 11 years ago
better parsing of PED files.	arq5x	More...				over 11 years ago
remove uncessary imports; refactor	arq5x	More...				over 11 years ago
parsers for new cancer tools	arq5x	More...				over 11 years ago
better support for the gene column	arq5x	More...				over 11 years ago
finalize the set_somatic tool	arq5x	More...				over 11 years ago

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