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Commits : Listings

Analyzed about 3 hours ago. based on code collected about 8 hours ago.
Apr 29, 2023 — Apr 29, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Refactoring Record and AttributeValue class in progress. #65 #66 More... over 11 years ago
Updated build and install instructions More... over 11 years ago
Removed old filtering code More... over 11 years ago
Added install task and changed to old hash syntax. #70 More... over 11 years ago
Redesigned rake tasks for building. #70 More... over 11 years ago
Fix for 32-bit build More... over 11 years ago
Updated the README More... over 11 years ago
Added a few more manual pages. Closes #43 More... over 11 years ago
Added man page for gff3-select More... over 11 years ago
Added gff3-select tool More... over 11 years ago
Added manual page for gff3-ffetch More... over 11 years ago
Translation now works with sequences in lower case More... over 11 years ago
Added check for FASTA data if the first file is GFF3. Closes #71 More... over 11 years ago
Merge branch new-filtering-language More... over 11 years ago
Merge pull request #72 from pjotrp/master More... over 11 years ago
README More... over 11 years ago
Simplified README More... over 11 years ago
Replaced function call for compiling filtering expression and fixed a bug with >= and <= More... over 11 years ago
New filtering language compiles More... over 11 years ago
Removed validation option More... over 11 years ago
Added logger module and logging options to gff3-ffetch More... over 11 years ago
Implemented option for translation to protein in gff3-ffetch More... over 11 years ago
Refactoring, mostly to_fasta() and gff3-ffetch More... over 11 years ago
Implemented new options: --frame, --phase and --trim-end More... over 11 years ago
Removed unused variable in fasta-stats More... over 11 years ago
Fixed broken build in make-fasta-comparable dev tool More... over 11 years ago
Added counting of stop codons in bad positions to fasta_stats More... over 11 years ago
Added support for --no-assemble option to ffetch More... over 11 years ago
Added a few helper tools for testing gff3-ffetch More... over 11 years ago
Refactored fasta id generation More... over 11 years ago