minor graphics tweaks; allow empty/malformed tracks in graphics.karyotype() |
|
More...
|
over 12 years ago
|
add kmer analysis tool to assembly.kmer.histogram(), excerpt from allpaths-lg |
|
More...
|
over 12 years ago
|
fix a speed bug in formats.maf.alignment_details() (minor) |
|
More...
|
over 12 years ago
|
add --treefix to apps.phylo.build() |
|
More...
|
over 12 years ago
|
Merge branch 'master' of github.com:tanghaibao/jcvi |
|
More...
|
over 12 years ago
|
Allow switching reference and aligned maps in assembly.opticalmap.bed(). Added `append_source` option to append the GFF source name to the bed `accn` field |
|
More...
|
over 12 years ago
|
add legends to annotation.reformat.plot() |
|
More...
|
over 12 years ago
|
refactor portions of code from graphics.paper.napusretention() in graphics.chromosome.ChromosomeMap |
|
More...
|
over 12 years ago
|
implement prefix spill rules and complete annotation.reformat.instantiate() |
|
More...
|
over 12 years ago
|
implement gene name allocator in annotation.reformat.instantiate() |
|
More...
|
over 12 years ago
|
refactor name allocation in separate class in annotate.reformat.instantiate() |
|
More...
|
over 12 years ago
|
move option --detag into separate function in annotation.reformat.renumber() |
|
More...
|
over 12 years ago
|
beautify graphics.paper.napusretention() |
|
More...
|
over 12 years ago
|
add assembly.preprocess.count() to count the reads/bases from FASTQC outputs |
|
More...
|
over 12 years ago
|
add option --ghost to algorithms.catalog.enrich() |
|
More...
|
over 12 years ago
|
add algorithms.catalog.enrich() to enrich results after OMG |
|
More...
|
over 12 years ago
|
add --pctid and --pct options in algorithms.catalog.omgprepare() and formats.blast.cscore() |
|
More...
|
over 12 years ago
|
enrich figure contents graphics.paper.napusretention() |
|
More...
|
over 12 years ago
|
fix bug in apps.last --mask |
|
More...
|
over 12 years ago
|
add graphics.paper.napusretention(); bump up LICENSE year; Happy New Year! |
|
More...
|
over 12 years ago
|
fix bugs due to code upgrade in algorithms.synteny |
|
More...
|
over 12 years ago
|
place NOTE attributes in mRNA type lines, in formats.genbank.gff() |
|
More...
|
over 12 years ago
|
deprecate formats.gff.fromgb() |
|
More...
|
over 12 years ago
|
add formats.genbank.gff to convert Genbank file to GFF and FASTA |
|
More...
|
over 12 years ago
|
revert to normal behavior when filename list contains only one item in formats.base.must_open() |
|
More...
|
over 12 years ago
|
add option --note in formats.gff.format() |
|
More...
|
over 12 years ago
|
allow chrUn to be parsed by OMG |
|
More...
|
over 12 years ago
|
add annotation.reformat.tRNAscan() |
|
More...
|
over 12 years ago
|
bug fix (minor) |
|
More...
|
over 12 years ago
|
typo fix qhighlight->shighlight in graphics.blastplot |
|
More...
|
over 12 years ago
|