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Analyzed about 2 hours ago. based on code collected about 3 hours ago.
Jul 20, 2024 — Jul 20, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Merge branch 'master' of github.com:tanghaibao/jcvi
tanghaibao
as Haibao Tang
More... over 13 years ago
finish annotation.maker.split()
tanghaibao
as Haibao Tang
More... over 13 years ago
Minor fix to formats.ace.extract(). Now write to an output FASTA file instead of stdout. Removed redundant 'print' lines from formats.ace.report()
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
tanghaibao
as Haibao Tang
More... over 13 years ago
add option --query to formats.bed.evaluate()
tanghaibao
as Haibao Tang
More... over 13 years ago
add jcvi.format.ace to parse ace files. provide two options to extract contigs from ace file and prepare report of read location, consensus location or quality clip segments per contig
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
add formats.bed.index() to index bed files using tabix
tanghaibao
as Haibao Tang
More... over 13 years ago
add formats.fileindex.bed() and annotation.maker.split()
tanghaibao
as Haibao Tang
More... over 13 years ago
calculate sensitivity, specificity, accuracy given two bed files in formats.bed.evaluate()
tanghaibao
as Haibao Tang
More... over 13 years ago
Added jcvi.formats.gff.frombed() to convert a simple bed file into GFF3 formatted output
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
add Ks histogram plotter option --pdf to apps.ks.report()
tanghaibao
as Haibao Tang
More... over 13 years ago
add algorithms.synteny.groups() and apps.ks.fromgroups()
tanghaibao
as Haibao Tang
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
add annotation.pasa for PASA-related utilities
tanghaibao
as Haibao Tang
More... over 13 years ago
add jcvi.formats.blast.annotation() to convert BLAST output to two-column txtfile
tanghaibao
as Haibao Tang
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
add --uniprot in formats.fasta.some()
tanghaibao
as Haibao Tang
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
minor fix
tanghaibao
as Haibao Tang
More... over 13 years ago
push HOST and PHRED_64 options in PrepareAllPathsInput.pl
tanghaibao
as Haibao Tang
More... over 13 years ago
modify assembly.preprocess to reflect most recent ALLPATHS changes
tanghaibao
as Haibao Tang
More... over 13 years ago
make formats.fastq.convert() options more user friendly
tanghaibao
as Haibao Tang
More... over 13 years ago
fix bug in write_csv
tanghaibao
as Haibao Tang
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
add formats.blast.completeness() and formats.gff.fromgtf()
tanghaibao
as Haibao Tang
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago
make valid maf format in apps.last.last()
tanghaibao
as Haibao Tang
More... over 13 years ago
add LAST wrapper in apps.lastz
tanghaibao
as Haibao Tang
More... over 13 years ago
Merge branch 'master' of github.com:tanghaibao/jcvi
vivekkrish
as Vivek Krishnakumar
More... over 13 years ago