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Analyzed 7 months ago. based on code collected 7 months ago.

Project Summary

Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress that is being used already for production in some research centers.

Features:
* Quality Control
* Mapping in a reference genome
* Tasks related to variants:
** Calling
** Filtering
** Annotating
** Reporting effects and basic statistics
* Sending an email once the run is finished.

More information: ueb(a)vhir.org

Tags

annovar bioconductor bioinformatics bio_informatics clustercomputing exome indel pipeline r sequencing snowfall snp snpeff variants vcf

In a Nutshell, Exome Variant Analysis...

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These details are provided for information only. No information here is legal advice and should not be used as such.

This Project has No vulnerabilities Reported Against it

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R
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30 Day Summary

Feb 9 2021 — Mar 11 2021

12 Month Summary

Mar 11 2020 — Mar 11 2021

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