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The Princeton Protein Orthology Database
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Inactive
Commits
: Listings
Analyzed
about 5 hours
ago. based on code collected
about 13 hours
ago.
Mar 28, 2023 — Mar 28, 2024
Showing page 1 of 3
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Contributor
Files Modified
Lines Added
Lines Removed
Code Location
Date
moved makefiles into the include directory
svenmh
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almost 15 years ago
convert ncbi blast xml files to a upenn bpo file
svenmh
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about 15 years ago
it now outputs group files a little morke like OrthoMCL
svenmh
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over 15 years ago
fixed up for slight DB change
svenmh
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almost 16 years ago
converts some local ids to values that humans can understand
svenmh
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almost 16 years ago
load some files into the database
svenmh
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almost 16 years ago
added progress bar
svenmh
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almost 16 years ago
make file to generate trees using proml on a cluster that submits jobs with qsub
svenmh
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almost 16 years ago
updated for the new Chado usage
svenmh
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almost 16 years ago
renamed blastp.mk to clan.mk
svenmh
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almost 16 years ago
updated for new database schema
svenmh
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about 16 years ago
added progress bar
svenmh
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about 16 years ago
removed reference on an obosolete program
svenmh
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about 16 years ago
updated a bit before showing Chris Mungall
svenmh
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about 16 years ago
it now write to the featureprop table, not the dbxref table
svenmh
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about 16 years ago
*** empty log message ***
svenmh
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about 16 years ago
fixed up how dry run works
svenmh
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about 16 years ago
forgot to commit this with treefile2phylotree change
svenmh
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about 16 years ago
fixed up a typo
svenmh
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about 16 years ago
made work for family_name.treefile instead of the old subdirectory method
svenmh
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about 16 years ago
added orphan finder sql
svenmh
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about 16 years ago
fixed up some spelling errors, and a commit issue.
svenmh
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about 16 years ago
fixed up some typos
svenmh
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about 16 years ago
just some sample queries to get same stats I thought worth saving
svenmh
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about 16 years ago
Adjusted things for new FASTA header line. Blasting should be easer now.
svenmh
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over 16 years ago
added src/Makefile
svenmh
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over 16 years ago
woops, wrong ChangLog file
svenmh
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over 16 years ago
replacing same slow perl stuff with C++ (thanks Mike Miller!)
svenmh
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over 16 years ago
told the world about sge-do
svenmh
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over 16 years ago
Gave Mike some credit
svenmh
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over 16 years ago
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