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Inactive
Commits
: Listings
Analyzed
about 9 hours
ago. based on code collected
about 9 hours
ago.
Aug 22, 2024 — Aug 22, 2025
Showing page 56 of 61
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Commit Message
Contributor
Files Modified
Lines Added
Lines Removed
Code Location
Date
Slightly altered dialog. Made certain blanks were treated properly.
Vanessa Williams
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over 15 years ago
Allow changing of arc mode parameters.
Vanessa Williams
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over 15 years ago
Use BAMParametersDialog when opening a BAM file.
Vanessa Williams
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over 15 years ago
Initial check-in.
Vanessa Williams
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over 15 years ago
Use settings to colour discordant-by-size arcs.
Vanessa Williams
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over 15 years ago
New instructions for discordant min and max (mate pairs)
Vanessa Williams
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over 15 years ago
git-svn-id: https://svn2.assembla.com/svn/savant/Savant/trunk@487 096565f4-0d05-4fcd-8cbf-ff6523290f6f
Vanessa Williams
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over 15 years ago
Use DrawModeController to switch view modes.
Vanessa Williams
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over 15 years ago
Use minimum arc size threshold to avoid drawing small arcs.
Vanessa Williams
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over 15 years ago
Implement DrawModeChangedListener and disable self if associated track's drawMode is changed to MATE_PAIRS. Nasty kludge!
Vanessa Williams
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over 15 years ago
Include an arc size visibility threshold.
Vanessa Williams
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over 15 years ago
prepareForRendering throws Throwable, not Exception.
Vanessa Williams
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over 15 years ago
getRecords throws Throwable, not Exception.
Vanessa Williams
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over 15 years ago
Attempt to cancel formatting.
Vanessa Williams
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over 15 years ago
Code nits.
Vanessa Williams
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over 15 years ago
Initial check-in.
Vanessa Williams
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over 15 years ago
Initial check-in.
Vanessa Williams
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over 15 years ago
Initial check-in.
Vanessa Williams
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over 15 years ago
Added instruction for arc minimum length (ARC_MIN)
Vanessa Williams
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over 15 years ago
added cancel button (needs to kill thread)
Marc Fiume
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over 15 years ago
added length to UI
Marc Fiume
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over 15 years ago
Changed throw Exception to throw Throwable on switchmode (because of prepareForRendering call.)
Vanessa Williams
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over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors.
Vanessa Williams
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over 15 years ago
Cleanup. Get insert size from record.
Vanessa Williams
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over 15 years ago
Cleanup of unused code. Pre-compute insert size.
Vanessa Williams
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over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors. Disabled coverage mode in mate pair mode. Get insert size from data record, rather than re-computing. Don't include insert sizes larger than range in computation of ymax.
Vanessa Williams
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over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors.
Vanessa Williams
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over 15 years ago
Added property insertSize.
Vanessa Williams
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over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors.
Vanessa Williams
More...
over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors.
Vanessa Williams
More...
over 15 years ago
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