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I Use This!
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Commits : Listings

Analyzed about 9 hours ago. based on code collected about 9 hours ago.
Aug 22, 2024 — Aug 22, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Slightly altered dialog. Made certain blanks were treated properly. More... over 15 years ago
Allow changing of arc mode parameters. More... over 15 years ago
Use BAMParametersDialog when opening a BAM file. More... over 15 years ago
Initial check-in. More... over 15 years ago
Use settings to colour discordant-by-size arcs. More... over 15 years ago
New instructions for discordant min and max (mate pairs) More... over 15 years ago
git-svn-id: https://svn2.assembla.com/svn/savant/Savant/trunk@487 096565f4-0d05-4fcd-8cbf-ff6523290f6f More... over 15 years ago
Use DrawModeController to switch view modes. More... over 15 years ago
Use minimum arc size threshold to avoid drawing small arcs. More... over 15 years ago
Implement DrawModeChangedListener and disable self if associated track's drawMode is changed to MATE_PAIRS. Nasty kludge! More... over 15 years ago
Include an arc size visibility threshold. More... over 15 years ago
prepareForRendering throws Throwable, not Exception. More... over 15 years ago
getRecords throws Throwable, not Exception. More... over 15 years ago
Attempt to cancel formatting. More... over 15 years ago
Code nits. More... over 15 years ago
Initial check-in. More... over 15 years ago
Initial check-in. More... over 15 years ago
Initial check-in. More... over 15 years ago
Added instruction for arc minimum length (ARC_MIN) More... over 15 years ago
added cancel button (needs to kill thread) More... over 15 years ago
added length to UI More... over 15 years ago
Changed throw Exception to throw Throwable on switchmode (because of prepareForRendering call.) More... over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors. More... over 15 years ago
Cleanup. Get insert size from record. More... over 15 years ago
Cleanup of unused code. Pre-compute insert size. More... over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors. Disabled coverage mode in mate pair mode. Get insert size from data record, rather than re-computing. Don't include insert sizes larger than range in computation of ymax. More... over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors. More... over 15 years ago
Added property insertSize. More... over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors. More... over 15 years ago
Changed some throws Exception to throws Throwable to catch out of memory errors. More... over 15 years ago