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Commits
: Listings
Analyzed
3 months
ago. based on code collected
over 3 years
ago.
Dec 18, 2019 — Dec 18, 2020
Showing page 1 of 56
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Date
fix for copy-on-write of GT_SeqBlock and GT_AnnoEleBlock structs. This was causing save after edits in the contig editor to crash.
jkbonfield
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almost 15 years ago
Fixed annotation viewing. Clicking on an annotation caused crashes and also display glitches due to not expected xx->cursor_type to be GT_AnnoEle.
jkbonfield
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almost 15 years ago
Added xscrolledtext and xscrolledlistbox widgets - to replace iwidget equivalents. (Not 100%, but sufficient for our purposes.)
jkbonfield
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almost 15 years ago
Updated version to 1.2.2
jkbonfield
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almost 15 years ago
More 64-bit printf tweaks.
jkbonfield
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almost 15 years ago
Gracefully handle the case of a trace with no BPOS chunk in ztr2read().
jkbonfield
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almost 15 years ago
Added the hash table iterator functions (copied from Gap5's hache tables).
jkbonfield
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almost 15 years ago
Fixed a memory allocation issue of codes2codeset().
jkbonfield
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almost 15 years ago
Remove use of curl-config --libs. While useful for linking against static libraries, it just adds unwanted dependencies in a dynamic build environment.
jkbonfield
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almost 15 years ago
Minor format change
jkbonfield
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almost 15 years ago
*** empty log message ***
jkbonfield
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almost 15 years ago
Removal of minor compilation warnings.
jkbonfield
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almost 15 years ago
Renamed GetRasterWinSize to RasterWinSize in header file. (The former function doesn't exist.)
jkbonfield
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almost 15 years ago
Updated various functions to use int64_t instead of int for contig coordinates. Specifically anything using the total contig length or coordinates in the contig selector.
jkbonfield
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almost 15 years ago
Switched to using int64_t for some data types.
jkbonfield
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almost 15 years ago
Export more functions
jkbonfield
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almost 15 years ago
General code tidyup. Removal of unused variables; deleted old #if 0 code (will get it back if we need afterall); tidied up some const vs non-const warnings, etc.
jkbonfield
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almost 15 years ago
Added timing stats.
jkbonfield
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almost 15 years ago
Removal of some debugging info.
jkbonfield
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almost 15 years ago
Added an interface to changing the "stacking y size" (only used in stacking mode).
jkbonfield
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almost 15 years ago
Added a template size blocking factor for use in the Stacking Y-mode. This groups like-sized templates together, causing extra-long templates to appear beneath the smaller ones and so rearrangements become easier to spot.
jkbonfield
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almost 15 years ago
Initialise more elements in range_t. They were left uninitialised so all sorts of things could happen!
jkbonfield
More...
almost 15 years ago
Improved the editor information line to show contig names when a read-pair has the position in another contig rather than this one.
jkbonfield
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almost 15 years ago
Now set seq.bin_index too. Without this it was causing assertion failures in sequence_get_pair() during viewing in gap5.
jkbonfield
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almost 15 years ago
Minor TAG_BRIEF_FORMAT change.
jkbonfield
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almost 15 years ago
The get_seq_status editor method (calling edview_item_at_pos in C) can return AnnoEle records as well as the usual sequence/contig records. Thefore we can now show tag summary data in the editor information bar too.
jkbonfield
More...
almost 15 years ago
Annotations now have their Y coordinates allocated too (if requested) so that they reside on top of the correct sequence Y location.
jkbonfield
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almost 15 years ago
Added an anno_get_range() function to return the range_t struct associated with an annotation. This allows us to query positional data, flags, etc.
jkbonfield
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almost 15 years ago
Added a Hide Annotations setting in the contig editor, also bound to control-Q. This allows us to see the quality values underneath a tag.
jkbonfield
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almost 15 years ago
Removed memory corruption when displaying long sequence tags.
jkbonfield
More...
almost 15 years ago
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