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Analyzed 3 months ago. based on code collected over 3 years ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Dec 18, 2019 — Dec 18, 2020 Showing page 1 of 56 Search / Filter on:
fix for copy-on-write of GT_SeqBlock and GT_AnnoEleBlock structs. This was causing save after edits in the contig editor to crash.	jkbonfield	More...				almost 15 years ago
Fixed annotation viewing. Clicking on an annotation caused crashes and also display glitches due to not expected xx->cursor_type to be GT_AnnoEle.	jkbonfield	More...				almost 15 years ago
Added xscrolledtext and xscrolledlistbox widgets - to replace iwidget equivalents. (Not 100%, but sufficient for our purposes.)	jkbonfield	More...				almost 15 years ago
Updated version to 1.2.2	jkbonfield	More...				almost 15 years ago
More 64-bit printf tweaks.	jkbonfield	More...				almost 15 years ago
Gracefully handle the case of a trace with no BPOS chunk in ztr2read().	jkbonfield	More...				almost 15 years ago
Added the hash table iterator functions (copied from Gap5's hache tables).	jkbonfield	More...				almost 15 years ago
Fixed a memory allocation issue of codes2codeset().	jkbonfield	More...				almost 15 years ago
Remove use of curl-config --libs. While useful for linking against static libraries, it just adds unwanted dependencies in a dynamic build environment.	jkbonfield	More...				almost 15 years ago
Minor format change	jkbonfield	More...				almost 15 years ago
* empty log message *	jkbonfield	More...				almost 15 years ago
Removal of minor compilation warnings.	jkbonfield	More...				almost 15 years ago
Renamed GetRasterWinSize to RasterWinSize in header file. (The former function doesn't exist.)	jkbonfield	More...				almost 15 years ago
Updated various functions to use int64_t instead of int for contig coordinates. Specifically anything using the total contig length or coordinates in the contig selector.	jkbonfield	More...				almost 15 years ago
Switched to using int64_t for some data types.	jkbonfield	More...				almost 15 years ago
Export more functions	jkbonfield	More...				almost 15 years ago
General code tidyup. Removal of unused variables; deleted old #if 0 code (will get it back if we need afterall); tidied up some const vs non-const warnings, etc.	jkbonfield	More...				almost 15 years ago
Added timing stats.	jkbonfield	More...				almost 15 years ago
Removal of some debugging info.	jkbonfield	More...				almost 15 years ago
Added an interface to changing the "stacking y size" (only used in stacking mode).	jkbonfield	More...				almost 15 years ago
Added a template size blocking factor for use in the Stacking Y-mode. This groups like-sized templates together, causing extra-long templates to appear beneath the smaller ones and so rearrangements become easier to spot.	jkbonfield	More...				almost 15 years ago
Initialise more elements in range_t. They were left uninitialised so all sorts of things could happen!	jkbonfield	More...				almost 15 years ago
Improved the editor information line to show contig names when a read-pair has the position in another contig rather than this one.	jkbonfield	More...				almost 15 years ago
Now set seq.bin_index too. Without this it was causing assertion failures in sequence_get_pair() during viewing in gap5.	jkbonfield	More...				almost 15 years ago
Minor TAG_BRIEF_FORMAT change.	jkbonfield	More...				almost 15 years ago
The get_seq_status editor method (calling edview_item_at_pos in C) can return AnnoEle records as well as the usual sequence/contig records. Thefore we can now show tag summary data in the editor information bar too.	jkbonfield	More...				almost 15 years ago
Annotations now have their Y coordinates allocated too (if requested) so that they reside on top of the correct sequence Y location.	jkbonfield	More...				almost 15 years ago
Added an anno_get_range() function to return the range_t struct associated with an annotation. This allows us to query positional data, flags, etc.	jkbonfield	More...				almost 15 years ago
Added a Hide Annotations setting in the contig editor, also bound to control-Q. This allows us to see the quality values underneath a tag.	jkbonfield	More...				almost 15 years ago
Removed memory corruption when displaying long sequence tags.	jkbonfield	More...				almost 15 years ago

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