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Inactive
Commits
: Listings
Analyzed
about 22 hours
ago. based on code collected
1 day
ago.
Apr 24, 2023 — Apr 24, 2024
Showing page 1 of 169
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Date
if trust_beam_centre do not search other index origins; if reference_geometry then trust_beam_centre
graeme_winter
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almost 9 years ago
Clean HTML clutter
graeme_winter
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almost 9 years ago
Revert change which broke xia2html; FIXME need to remake this change with a corresponding change to xia2html
graeme_winter
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almost 9 years ago
use dials.check_indexing_symmetry to check for mis-indexing-by-1
rjgildea
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almost 9 years ago
use glm background algorithm by default
rjgildea
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almost 9 years ago
update tests
rjgildea
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almost 9 years ago
more specific phil parameter
rjgildea
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almost 9 years ago
set min_local=0 in dials.find_spots
rjgildea
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almost 9 years ago
fix tests
rjgildea
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almost 9 years ago
Work in progress towards detecting completely blank images
graeme_winter
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almost 9 years ago
dmin -> d_min, patch courtsey of jmp85
mgerstel
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almost 9 years ago
Accept reason in reindex assignment
graeme_winter
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almost 9 years ago
#1 explain why setting reindex operation to aid debugging; #2 set *inverse* reindex operation (doh)
graeme_winter
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almost 9 years ago
support global_threshold=auto
rjgildea
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almost 9 years ago
pass global_threshold parameter to dials.find_spots
rjgildea
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almost 9 years ago
catch phil interpretation runtimeerror and re-raise as Sorry
rjgildea
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almost 9 years ago
If unify_setting; do the reindexing to a common actual orientation matrix stuff; seems to work but also seems to not make the results any better :o(
graeme_winter
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almost 9 years ago
Removed previous attempt at reindexing to standard setting; to do this properly is ever so slightly more complicated
graeme_winter
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almost 9 years ago
A hill of commits working towards being able to unify crystal orientation matrices when data have been recorded with > 1 setting and crystal symmetry allows for ambiguity in the setting; also seems pointless with sparse data can make a mess of reindexing => allow old ccp4 reindex to be used; need to set unify_setting=true on the command line to get this behaviour to be triggered; asserted but not tested that the data are from a single sample etc...
graeme_winter
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almost 9 years ago
Code to generate masks from diffraction images by shadowed region; pass total counts & long list of images
graeme_winter
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almost 9 years ago
typo fix
graeme_winter
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almost 9 years ago
Changed syntax of is_similar_to: this is not tested?
graeme_winter
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almost 9 years ago
If modern aimless; set odd #terms as well as even
graeme_winter
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almost 9 years ago
If small molecule don't use 20 bins (messes things up) and don't by default include B factor correction in scaling
graeme_winter
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almost 9 years ago
Switch off SdB correction for small molecule work; remove ties; extend range for outlier rejection (makes sd refinement more stable)
graeme_winter
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almost 9 years ago
Use wider scale factor ranges for small molecule work
graeme_winter
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almost 9 years ago
Do not want to use this reindex at the moment, breaks M/ISYM flags
graeme_winter
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almost 9 years ago
Unwelcome emergent behaviour; now recording merged MTZ file
graeme_winter
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almost 9 years ago
If small molecule and no reindex op; reindex MTZ file using code from CCTBX in place of POINTLESS; works around issue with batches missing after reindex
graeme_winter
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almost 9 years ago
Small changes to manipulate data less if small molecule
graeme_winter
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almost 9 years ago
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