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Jmol

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  Analyzed 13 days ago

Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs.

481K lines of code

4 current contributors

About 1 month since last commit

13 users on Open Hub

High Activity
4.0
   

BioJava

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  Analyzed about 1 month ago

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines i... [More]

312K lines of code

22 current contributors

About 1 month since last commit

13 users on Open Hub

Activity Not Available
4.5
   

SHOGUN

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  Analyzed 13 days ago

The SHOGUN machine learning toolbox's focus is on large scale kernel methods and especially on Support Vector Machines (SVM). It comes with a generic interface for SVMs, features several SVM and kernel implementations, includes LinAdd optimizations and also Multiple Kernel Learning algorithms. SHOGUN also implements a number of lin... [More]

618K lines of code

45 current contributors

About 1 month since last commit

11 users on Open Hub

High Activity
5.0
 

GenoViz

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  Analyzed about 1 month ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an application built upon the GenoVi... [More]

165K lines of code

9 current contributors

About 1 month since last commit

4 users on Open Hub

Activity Not Available
5.0
 

QuteMol

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  Analyzed about 1 month ago

QuteMol is an open source (GPL), interactive, high quality molecular visualization system. QuteMol exploits the current GPU capabilities through OpenGL shaders to offers an array of innovative visual effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding of the 3D shape and structure of lar... [More]

11.1K lines of code

0 current contributors

Over 7 years since last commit

2 users on Open Hub

Activity Not Available
0
 

tranSMART

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  Analyzed about 1 month ago

tranSMART is an OSS for translational research. The tranSMART Foundation (www.transmartfoundation.org) coordinates the community that is developing around the tranSMART platform.

1.54M lines of code

58 current contributors

About 1 month since last commit

2 users on Open Hub

Activity Not Available
5.0
 

bio-charm

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  Analyzed about 1 month ago

CHarm provides codon harmonization for heterologous expression systems.

552 lines of code

1 current contributors

11 months since last commit

1 users on Open Hub

Activity Not Available
0
 

R'MES

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  Analyzed about 1 month ago

R'MES is a set of command-line tools to assess the exceptionality of words or families of words in biological sequences. Using different mathematical models it gives a statistical measure of how much occurrences of words in sequences deviate from their expected values, an can thus single out words having a potential biological int... [More]

31.7K lines of code

0 current contributors

Over 4 years since last commit

1 users on Open Hub

Activity Not Available
0
 

MOLGENIS model-driven database platform

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  Analyzed 6 months ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

498K lines of code

0 current contributors

About 2 years since last commit

1 users on Open Hub

Activity Not Available
4.0
   
Licenses: No declared licenses

PPI Benchmark

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  Analyzed over 1 year ago

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

721K lines of code

2 current contributors

Over 2 years since last commit

1 users on Open Hub

Activity Not Available
0
 
Licenses: No declared licenses