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samtools

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  Analyzed about 4 hours ago

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM tools provide efficient utilities on manipulating alignments in the SAM format.

43.4K lines of code

14 current contributors

9 days since last commit

5 users on Open Hub

Moderate Activity
0.0
 
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Bioclipse

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  Analyzed 3 months ago

The Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from ... [More] Eclipse, such as help system, software updates, preferences, cross-platform deployment etc. [Less]

537K lines of code

0 current contributors

almost 3 years since last commit

5 users on Open Hub

Activity Not Available
4.66667
   
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OpenMS

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  Analyzed 1 day ago

An open source framework for LC-MS based proteomics. OpenMS offers datastructures and algorithms for the processing of mass spectrometry data. The library is written in C++.

1.02M lines of code

45 current contributors

4 days since last commit

4 users on Open Hub

Very High Activity
5.0
 
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GenoViz

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  Analyzed 1 day ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an ... [More] application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]

187K lines of code

35 current contributors

9 months since last commit

4 users on Open Hub

Very Low Activity
5.0
 
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Apache Taverna

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Claimed by Apache Software Foundation No analysis available

The Taverna project aims to provide a language and software tools to facilitate easy use of workflow and distributed compute technology within the eScience community.

0 lines of code

0 current contributors

0 since last commit

4 users on Open Hub

Activity Not Available
4.6
   
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Mostly written in language not available
Licenses: apache_2

Cytoscape

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  Analyzed about 21 hours ago

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.

1.15M lines of code

30 current contributors

2 days since last commit

4 users on Open Hub

Moderate Activity
5.0
 
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PathVisio

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  No analysis available

Utility for creating / edit biological pathways and and visualizing high-throughput data (e.g. microarray data) in the context of pathways.

0 lines of code

0 current contributors

0 since last commit

4 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: apache_2

ProteoWizard

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  Analyzed about 7 hours ago

The ProteoWizard Library is a set of software libraries and tools for rapid development of proteomics data analysis software. The libraries are cross-platform and built from the ground up using modern C++ techniques.

5.43M lines of code

17 current contributors

3 days since last commit

3 users on Open Hub

Moderate Activity
0.0
 
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QuteMol

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  Analyzed about 16 hours ago

QuteMol is an open source (GPL), interactive, high quality molecular visualization system. QuteMol exploits the current GPU capabilities through OpenGL shaders to offers an array of innovative visual effects. QuteMol visualization techniques are aimed at improving clarity and an easier understanding ... [More] of the 3D shape and structure of large molecules or complex proteins. * Real Time Ambient Occlusion * Depth Aware Silhouette Enhancement * Ball and Sticks, Space-Fill and Liquorice visualization modes * High resolution antialiased snapshots for creating publication quality renderings * Automatic generation of animated gifs of rotating molecules for web pages animations * Interactive rendering of large molecules and protein (>100k atoms) * Standard PDB input [Less]

5.96K lines of code

0 current contributors

over 16 years since last commit

2 users on Open Hub

Inactive
0.0
 
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Bio::Phylo

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  Analyzed 15 minutes ago

Phylogenetic analysis using perl.

126K lines of code

1 current contributors

over 5 years since last commit

2 users on Open Hub

Inactive
0.0
 
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Licenses: Artistic_..., gpl