Projects tagged ‘massspectrometry’

MSQuant

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No analysis available

MSQuant is a tool for quantitative proteomics/mass spectrometry and processes spectra and LC runs to find quantitative information about proteins and peptides. Though automated it also allows manual inspection and change.

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Mostly written in language not available

Licenses: No declared licenses

glycresoft_sqlalchemy

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Analyzed about 5 hours ago

An experiment in moving data store and search into an RDBMS

201K lines of code

0 current contributors

over 7 years since last commit

0 users on Open Hub

Inactive

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Mostly written in JavaScript

Licenses: No declared licenses

Tags bioinformatics database glycomics glycoproteomics massspectrometry proteomics

OBI-Warp

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Analyzed 1 day ago

Ordered Bijective Interpolated Warping (OBI-Warp) aligns matrices using Dynamic Time Warping with a one-to-one (bijective) smooth warp-function. It is ideal for the chromatographic alignment of complex mass spectrometry proteomics data.

15.8K lines of code

0 current contributors

over 13 years since last commit

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Mostly written in C++

Licenses: mit

Tags bioinformatics lcmsdata massspectrometry

Comet MS/MS search engine

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Analyzed about 2 hours ago

Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS ... [More]

195K lines of code

0 current contributors

over 2 years since last commit

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Inactive

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Mostly written in C++

Licenses: apache_2

Tags bioinformatics massspectrometry proteomics

phpMs

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Analyzed 1 day ago

PHP Mass Spectrometry utilty classes

11.1K lines of code

1 current contributors

almost 4 years since last commit

0 users on Open Hub

Inactive

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Mostly written in PHP

Licenses: apache_2

Tags bioinformatics lcms lcmsdata massspectrometry php proteomics

pyMSA

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Analyzed about 18 hours ago

pyMSA - Python tools for Open Mass Spectrometry

13.1K lines of code

0 current contributors

almost 11 years since last commit

0 users on Open Hub

Inactive

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Mostly written in Python

Licenses: gpl3_or_l...

Tags bioinformatics massspectrometry proteomics python

Central Proteomics Facilities Pipeline

Analyzed 1 day ago

CPFP provides a pipeline for the analysis of MS/MS proteomic data, targeted at the needs of central proteomics facilities.

434K lines of code

0 current contributors

over 8 years since last commit

0 users on Open Hub

Inactive

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Mostly written in Perl

Licenses: common_de...

Tags bioinformatics massspec massspectrometry proteomics

Peptide-Shaker

Analyzed 1 day ago

PeptideShaker is a user friendly program dedicated to proteomic research. It achieves peptide and protein identification as well as posttranslational modification mapping based on peptide to spectrum matches from Mascot, OMSSA and X!Tandem and displays the results in an intuitive interface.

111K lines of code

3 current contributors

10 days since last commit

0 users on Open Hub

Low Activity

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Mostly written in Java

Licenses: apache_2

Tags mascot massspectrometry omssa proteomics searchgui xtandem

mprc-swift

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Web app allowing the user to search multiple tandem mass spectrometry datafiles using multiple proteomics search engines at once: Mascot, Sequest, X!Tandem, OMSSA and Myrimatch. The results are combined by Scaffold. Additional statistics are calculated.

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Mostly written in language not available

Licenses: apache_2

Tags mascot massspectrometry omssa proteomics scaffold sequest thermo xtandem

SearchGUI

Analyzed about 18 hours ago

graphical user interface for proteomics identification search engines.

684K lines of code

2 current contributors

10 days since last commit

0 users on Open Hub

Low Activity

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Mostly written in Java

Licenses: apache_2

Tags java massspectrometry omssa peptideshaker proteomics xtandem

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