Tags : Browse Projects

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J-Pilot

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  Analyzed about 1 year ago

J-Pilot is a desktop organizer application for PalmOS devices. It is meant to be an alternative to the Palm Desktop for those who run the most popular Operating Systems in the World, Linux and Unix.

45.4K lines of code

0 current contributors

about 3 years since last commit

3 users on Open Hub

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4.0
   
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nMoldyn

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  Analyzed about 2 months ago

nMOLDYN is an interactive analysis program for Molecular Dynamics simulations. It is especially designed for the computation and analysis of neutron scattering spectra, but also computes other quantities.

170K lines of code

0 current contributors

about 2 years since last commit

2 users on Open Hub

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0.0
 
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Licenses: No declared licenses

Visualization of Protein-Ligand Graphs

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  Analyzed about 2 months ago

The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm.

999K lines of code

0 current contributors

almost 2 years since last commit

1 users on Open Hub

Activity Not Available
4.0
   
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ProDy

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  Analyzed 7 months ago

ProDy is a free and open-source Python package for analysis and modeling of protein structural dynamics. It allows for efficient analysis of large datasets and is suitable for development or prototyping of structure-based analysis and modeling software.

41.5K lines of code

8 current contributors

7 months since last commit

1 users on Open Hub

Activity Not Available
5.0
 
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molecular-view

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  Analyzed about 1 year ago

Molecular View is a desktop application for the visualization of protein database (PDB) files. It interprets ".pdb" and ".ent" files, allowing the visualization of the correspondent 3D molecules. PDB example files can be downloaded from wwwPDB. The software also enables exporting the 3D model to ... [More] ".stl" (binary) and ".vrml" (2.0) file formats, frequently used for Rapid Prototyping physical reconstruction. The software is written in Python 2.5. Visualization Toolkit VTK 5.1 is used both for visualization and file conversion. In regards to the user interface, wxPython 2.8 was used. Molecular View is multi-platform (Windows and Linux). The team who developed Molecular View is also responsible for the 3D Medical Reconstruction software InVesalius, which is inserted into the project Rapid Pr [Less]

607 lines of code

0 current contributors

over 9 years since last commit

1 users on Open Hub

Activity Not Available
3.5
   
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mmdb

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  Analyzed 10 months ago

MMDB is a macromolecular coordinate library, written by Eugene Krissinel. It supports reading and writing two file formats, PDB and mmCIF, and provides high-level tools for working with coordinate files: orthogonal-fractional coordinate transforms, generation of symmetry mates, editing the ... [More] molecular structure and some others. Tarballs available at: ftp://ftp.ccp4.ac.uk/opensource/ [Less]

70.9K lines of code

0 current contributors

over 3 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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Auto Kindle eBook Converter

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  Analyzed about 2 months ago

This project was originally a quick and dirty method for me to convert my ebook collection in various formats to a kindle compatible format without worrying about the ebook source type. It takes PDF, Lit, and HTML files and converts them to .mobi.

12.9K lines of code

0 current contributors

almost 8 years since last commit

1 users on Open Hub

Activity Not Available
3.0
   
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Licenses: No declared licenses

C# Program Database (PDB) Library

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  Analyzed about 2 months ago

A C# 4.0 library for reading Microsoft Program Database (PDB) files.

882 lines of code

0 current contributors

over 6 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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hollow

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  No analysis available

Hollow helps to visualize and quantify voids, pockets, and channels in protein structures. It generates fake atoms that fill space inside a structure specified in the PDB format. The output is a standard PDB file containing the fake atoms. The molecular surface of these atoms is an excellent ... [More] approximation to the cavity and can be easily rendered in standard molecular visualization software such as PyMOL, VMD or Chimera. In complements programs such as HOLE, CAVER, MOLE, SPHGEN, and CASTp. [Less]

0 lines of code

0 current contributors

0 since last commit

1 users on Open Hub

Activity Not Available
5.0
 
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Mostly written in language not available
Licenses: GPL-2.0+

zenpdb

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  Analyzed about 1 year ago

SummaryZenPDB is a Python module to process and analyze macromolecular structures. Macromolecular structures are represented as hierarchically nested python dictionaries, which allows to traverse and manipulate them in a pythonic way and implement structural biology algorithms compactly. This module ... [More] is also useful to establish processing pipelines. ZenPDB is currently capable of parsing and writing PDB files, but PDBML input is also planned. ZenPDB provides fast and versatile Cython implementations of important algorithms in structural biology, namely accessible surface area (ASA) and distance contact calculations by using kd-trees for nearest neighbour look-up. It is crystallography-aware and can construct crystal lattices, unit cells and biological units. DocumentationInstallationDependencies [Less]

13.7K lines of code

0 current contributors

over 8 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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