Tags : Browse Projects

ProDy is a free and open-source Python package for analysis and modeling of protein structural dynamics. It allows for efficient analysis of large datasets and is suitable for development or prototyping of structure-based analysis and modeling software.

OverviewBio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data. It is currently distributed as platform independent source code under the GPL version 2 license. Please visit the Main Bio3d Site for further information, Installation ... [More] instructions, Quick start guide and full Documentation. FeaturesThe ability to read and write structure, sequence and dynamics trajectory data. Perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis and principal component analysis of structure data. Perform conservation analysis of sequence and structural data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. CitationBio3D: An R package for the comparative analysis of protein structures. Grant, Rodrigues, Elsawy, Mccammon, Caves, (2006) Bioinformatics 22, 2695-2696 FULL TEXT [Less]