Tags : Browse Projects

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GenoViz

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  Analyzed about 1 month ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an ... [More] application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]

202K lines of code

3 current contributors

about 1 year since last commit

4 users on Open Hub

Activity Not Available
5.0
 
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Bika Open Source LIMS 3

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  Analyzed about 1 month ago

Code analysis here refers to version 3 of Bika's Free and Open Source laboratory information management systems for ISO 17025 compliant applications in agriculture, water quality management, environmental monitoring, food and beverages, public health, bio-informatics and inter-laboratory proficiency ... [More] testing. Bika combines web content management and workflow processing for a one-stop LIMS portal · Built in Plone · Professionally supported NB For the full code analysis, including Bika 1 and 2, please see archived statistics at Bikalabs.org - 7,781 commits, 37 contributors, 740816 lines of code, 201 years of effort at estimated cost of $11,050,000 bika (bi:ka Zulu trad) - report, from clan to clan, bring news of weddings, births, festivals and funerals tell it as it is [Less]

174K lines of code

12 current contributors

4 months since last commit

3 users on Open Hub

Activity Not Available
5.0
 
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java-traveling-salesman

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  Analyzed over 3 years ago

Traveling Salesman Problem - Java Genetic Algorithm Solution Binary/Source/SVN/Documentation available. Application features Implementation and comparison of different genetic algorithms - unisex random mutation - crossover algorithm - 2opt heuristics + unisex random mutation - ... [More] 2opt heuristics + crossover algorithm Open source multi platform Java application with well commented source code Console and GUI application mode Parametrized configuration Multi threading computation engine Application thread priority settings Simple map file formats, exporting existing maps, using external maps - map of 192 real cities from CZ, coordinates in S-JTSK, distances in meters - fractal maps (circle, triangle, square, spiral, ... ) Descriptive XML and PDF reports, converting XML reports to P [Less]

2.91K lines of code

0 current contributors

about 10 years since last commit

2 users on Open Hub

Activity Not Available
4.0
   
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cloudbiolinux

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  Analyzed about 1 month ago

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

11.8K lines of code

14 current contributors

4 months since last commit

2 users on Open Hub

Activity Not Available
0.0
 
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dANN

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  Analyzed about 1 year ago

The dANN project is a library to help facilitate artificial neural networks within other applications. It is currently written in Java, C++, and C#. However only the java version is currently in active development. If you want to obtain a version other than the java version you will need to get it ... [More] directly from GIT. Our intentions are two fold. First, to provide a powerful interface for programs to include conventional artificial neural network technology into their code. Second, To act as a testing ground for research and development of new AI concepts. We provide new AI technology we have developed, and the latest algorithms already on the market. In the spirit of modular programming the library also provides access to the primitive components giving you greater control. [Less]

8.32K lines of code

1 current contributors

about 2 years since last commit

2 users on Open Hub

Activity Not Available
5.0
 
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GPLib

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  No analysis available

Generic library for genetic programming in Haskell

0 lines of code

0 current contributors

0 since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: BSD-3-Clause

Madeline

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  Analyzed about 1 month ago

The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. Although the program takes inspiration from Madeline v. 0.935, the Madeline 2.0 Pedigree Drawing Engine, or just Madeline 2.0 for ... [More] short, is in fact a completely new program written from scratch. [Less]

56.3K lines of code

0 current contributors

over 1 year since last commit

1 users on Open Hub

Activity Not Available
5.0
 
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Beached Whale Frameshift

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  Analyzed about 1 year ago

This computes protein yield and reading frame displacement given a sequence of codons in addition to writing an infinite amount of tools to analyze or help generate those metrics. Throw in Perl for extra sexiness.

2.74K lines of code

0 current contributors

about 8 years since last commit

1 users on Open Hub

Activity Not Available
5.0
 
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Licenses: BSD-3-Clause, GPL-2.0+

MOLGENIS model-driven database platform

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  Analyzed almost 3 years ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

498K lines of code

0 current contributors

over 4 years since last commit

1 users on Open Hub

Activity Not Available
4.0
   
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Licenses: No declared licenses

R/qtl

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  Analyzed 8 months ago

R/qtl: A QTL mapping environment

87.3K lines of code

2 current contributors

8 months since last commit

1 users on Open Hub

Activity Not Available
5.0
 
I Use This
Licenses: No declared licenses