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cufflinks

  Analyzed about 19 hours ago

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these ... [More] transcripts based on how many reads support each one, taking into account biases in library preparation protocols. [Less]

83.5K lines of code

2 current contributors

almost 5 years since last commit

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