pennatula

Maastricht, The Netherlands

Managed Projects

Path_Module

P

Analyzed about 5 hours ago

Visualize datasets on Wikipathways pathways. Powered by PathVisioRPC.

210 lines of code

1 current contributors

over 6 years since last commit

1 users on Open Hub

Inactive

I Use This

Mostly written in R

Licenses: apache_2

Tags data_visualization microarray multi_omics pathway_analysis pathway_building

InteractionDB

I

Analyzed 2 days ago

A BridgeDB derby database to map interactions from different databases to each other. This database can be used to annotate interactions in PathVisio and Wikipathways.

300 lines of code

2 current contributors

over 3 years since last commit

1 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

reactome2gpml-converter

R

Analyzed about 23 hours ago

Converts Reactome pathways to GPML format

4.74K lines of code

3 current contributors

over 2 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

IntViz

I

Analyzed about 12 hours ago

Plugin to define visualization styles for Interactions.

3.27K lines of code

0 current contributors

over 9 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags data_visualization flux interactions multi_omics pathway_analysis

WPReactomeUploader

W

Analyzed about 19 hours ago

Script to Upload Reactome pathways in Wikipathways using the Wikipathways webservice

801 lines of code

3 current contributors

almost 5 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

PathVisioRPC

P

Analyzed about 16 hours ago

PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway statistics and exports results in various image formats. Since most major programming languages have a library/module providing XML-RPC ... [More]

1.98K lines of code

0 current contributors

almost 9 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Stat_Module

S

Analyzed about 2 hours ago

Simple statistics module for micro arrays. Powered by limma.

769 lines of code

1 current contributors

over 6 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in R

Licenses: apache_2

PathSBML

P

Analyzed about 14 hours ago

Import and validate SBML models, and visualize data on them in PathVisio.

26K lines of code

0 current contributors

over 9 years since last commit

0 users on Open Hub

Inactive

I Use This

Mostly written in Java

Licenses: apache_2

Tags data_visualization modelling pathway_building sbgn sbml