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Analyzed about 9 hours ago. based on code collected about 12 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Apr 30, 2023 — Apr 30, 2024 Showing page 8 of 50 Search / Filter on:
Remove num_alignments, since it's incompatible (and redundant) with max_target_sets for outfmt > 4. Thanks to Joshua Elkington	chapmanb	More...				over 10 years ago
Presentation for Mt Sinai workshop	chapmanb	More...				over 10 years ago
First draft of bcbio-nextgen paper for Frotiers submission	chapmanb	More...				over 10 years ago
Fix top level parse simple API for parent features. Generalize to handle directives and add test case. Thanks to @khughitt. Fixes #80	chapmanb	More...				over 10 years ago
Merge pull request #78 from khughitt/master	Brad Chapman	More...				over 10 years ago
Fixed manifest	Keith Hughitt	More...				over 10 years ago
Added MANIFEST	Keith Hughitt	More...				over 10 years ago
Updated setup.py to use distribute and 2to3 flag	Keith Hughitt	More...				over 10 years ago
converted internal relative paths to absolute ones	Keith Hughitt	More...				over 10 years ago
Talk on bcbio-nextgen for Arvados summit Oct 22 2013	chapmanb	More...				over 10 years ago
Finalize new variant caller comparison post	chapmanb	More...				over 10 years ago
Additional cleanups and clarifications on variant calling post	chapmanb	More...				over 10 years ago
Additional fix location for num_descriptions -> max_target_seqs for recent blast+	chapmanb	More...				over 10 years ago
Re-read and improve updated post on caller evaluation based on feedback	chapmanb	More...				over 10 years ago
Provide better debugging output when local custom FASTA files are missing	chapmanb	More...				over 10 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	chapmanb	More...				over 10 years ago
Blog post on updated comparisons of variant callers	chapmanb	More...				over 10 years ago
Add nice labels for identifying callers	chapmanb	More...				over 10 years ago
Improved plots for visualizing comparisons to reference materials. Pull entire workflow into python with matplotlib/prettyplotlib and pull aligner and BAM prep information from input config files	chapmanb	More...				over 10 years ago
Use max_target_seqs parameter for restricting output instead of num_descriptions. Thanks to Joshua Elkington	chapmanb	More...				over 10 years ago
Make input e-mail in configuration file optional	chapmanb	More...				over 10 years ago
Open files for CSV reading with universal line mode to handle cross platform line endings. Thanks to Joshua Elkington	chapmanb	More...				over 10 years ago
Add Biopython and PyYAML requirements to setup.py	chapmanb	More...				over 10 years ago
Provide basic support for new Biopython 1.62 handling of CompoundFeatures. Still uses deprecated sub_features until sorting out a reasonable place to put GFF attributes. Fixes #75	chapmanb	More...				over 10 years ago
Conference notes from BOSC 2013, day 2	chapmanb	More...				almost 11 years ago
BOSC day 1 notes and Codefest report	chapmanb	More...				almost 11 years ago
Work report from Codefest 2013	chapmanb	More...				almost 11 years ago
Additional work on BOSC 2013 talk: full initial set of slides	chapmanb	More...				almost 11 years ago
Continued work on BOSC talk; move back to org-mode to reveal	chapmanb	More...				almost 11 years ago
Merge branch 'master' of github.com:chapmanb/bcbb	chapmanb	More...				almost 11 years ago

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