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Analyzed about 18 hours ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Apr 28, 2023 — Apr 28, 2024 Showing page 2 of 8 Search / Filter on:
Added buffer for small performance improvement.	Keith James	More...				almost 13 years ago
Removed unnecessary type.	Keith James	More...				almost 13 years ago
Removed old comment.	Keith James	More...				almost 13 years ago
Added a BAM alignment struct.	Keith James	More...				almost 13 years ago
Removed unused functions.	Keith James	More...				almost 13 years ago
Use named constants, not magic numbers	Keith James	More...				about 13 years ago
Removed redundant let	Keith James	More...				about 13 years ago
Refactor indexed BAM file reading for with-bam macro	Keith James	More...				about 13 years ago
Set file bgzf-position correctly when EOF reached	Keith James	More...				about 13 years ago
Added bgzf-empty-p function	Keith James	More...				about 13 years ago
Added notes	Keith James	More...				about 13 years ago
Added alignment-reference-end convenience function	Keith James	More...				about 13 years ago
Copyright statement update	Keith James	More...				about 13 years ago
Rationalised with-bam macro to handle both full scans and indexed operations over multiple ranges	Keith James	More...				about 13 years ago
Ref-fixed bug where with-bam was ignoring the specified ref-num	Keith James	More...				about 13 years ago
Fixed bug where bin 0 was omitted!	Keith James	More...				about 13 years ago
Fixed bug where with-bam was ignoring the specified ref-num	Keith James	More...				about 13 years ago
Moved indexing functions to their own file	Keith James	More...				about 13 years ago
Indexing refactor	Keith James	More...				about 13 years ago
Made mock BAM file generator more flexible.	Keith James	More...				about 13 years ago
Added BAM error conditions	Keith James	More...				about 13 years ago
Added argument check for valid reference id	Keith James	More...				about 13 years ago
Added notes on indexing algorithm	Keith James	More...				about 13 years ago
Factored out rle function	Keith James	More...				about 13 years ago
Fixed up indexing to be relatively sane	Keith James	More...				about 13 years ago
Factored out code duplication	Keith James	More...				about 13 years ago
Index struct changes	Keith James	More...				about 13 years ago
Adding samtools hacks to the indexer	Keith James	More...				about 13 years ago
Removed incorrect test for ref-num when index is not provided	Keith James	More...				over 13 years ago
Merge branch 'sam-1.3'	Keith James	More...				over 13 years ago

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