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Commits : Listings

Analyzed about 16 hours ago. based on code collected about 23 hours ago.
Apr 28, 2023 — Apr 28, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
* Cosmetic changes. More... over 14 years ago
* Added header to test data. More... over 14 years ago
* Whitespace delta. More... over 14 years ago
* Removed use of namestring, replaced with pathstring where necessary, More... over 14 years ago
* Removed redundant tests. More... over 14 years ago
* Added SAM writing. This is mainly to help make writing tests easier; the test data can be text rather than binary. More... over 14 years ago
* Bumped version. More... over 14 years ago
* Updated timings for new versions of samtools and Picard, changes in cl-sam sort comparator and the new, queryname sorted test input file. More... over 14 years ago
* Changed coordinate sort to be identical to Picard. More... over 14 years ago
* Export versioning symbols. More... over 14 years ago
* Inlined some heavily used functions. More... over 14 years ago
* Allow header constructor to accept NIL. More... over 14 years ago
* Reorder file in ASDF file to pick up BAM alignment type declaration. More... over 14 years ago
* Added optimization declarations. More... over 14 years ago
* Added sorting symbols to exports. More... over 14 years ago
* Changed to stable sorting. More... over 14 years ago
* Changed array element type of +bam-magic+. More... over 14 years ago
* Fixed bug in header editing function ensure-order. More... over 14 years ago
* Bumped version. More... over 14 years ago
* Added tests for header parsing and editing. More... over 14 years ago
* Exported renamed API symbols. More... over 14 years ago
* Renamed header accessor functions (exported API change). More... over 14 years ago
* Updated samtools requirement to samtools 0.1.6 (bug fixes in samtools). More... over 14 years ago
* Completed docstrings for current API. More... over 14 years ago
* Exported read-bam-terminator. More... over 14 years ago
* Improved error message for truncated files. More... over 14 years ago
* Bumped version. More... over 14 years ago
* De novo BAM record creation now makes records that are byte-for-byte identical to those from samtools. More... over 14 years ago
* Added make-alignment-record function to allow de novo creation of BAM records. More... over 14 years ago
* Do not :use :deoxybyte-systems package. More... over 14 years ago