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Inactive
Commits
: Listings
Analyzed
about 16 hours
ago. based on code collected
about 23 hours
ago.
Apr 28, 2023 — Apr 28, 2024
Showing page 6 of 8
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Commit Message
Contributor
Files Modified
Lines Added
Lines Removed
Code Location
Date
* Cosmetic changes.
Keith James
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over 14 years ago
* Added header to test data.
Keith James
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over 14 years ago
* Whitespace delta.
Keith James
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over 14 years ago
* Removed use of namestring, replaced with pathstring where necessary,
Keith James
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over 14 years ago
* Removed redundant tests.
Keith James
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over 14 years ago
* Added SAM writing. This is mainly to help make writing tests easier; the test data can be text rather than binary.
Keith James
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over 14 years ago
* Bumped version.
Keith James
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over 14 years ago
* Updated timings for new versions of samtools and Picard, changes in cl-sam sort comparator and the new, queryname sorted test input file.
Keith James
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over 14 years ago
* Changed coordinate sort to be identical to Picard.
Keith James
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over 14 years ago
* Export versioning symbols.
Keith James
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over 14 years ago
* Inlined some heavily used functions.
Keith James
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over 14 years ago
* Allow header constructor to accept NIL.
Keith James
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over 14 years ago
* Reorder file in ASDF file to pick up BAM alignment type declaration.
Keith James
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over 14 years ago
* Added optimization declarations.
Keith James
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over 14 years ago
* Added sorting symbols to exports.
Keith James
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over 14 years ago
* Changed to stable sorting.
Keith James
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over 14 years ago
* Changed array element type of +bam-magic+.
Keith James
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over 14 years ago
* Fixed bug in header editing function ensure-order.
Keith James
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over 14 years ago
* Bumped version.
Keith James
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over 14 years ago
* Added tests for header parsing and editing.
Keith James
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over 14 years ago
* Exported renamed API symbols.
Keith James
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over 14 years ago
* Renamed header accessor functions (exported API change).
Keith James
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over 14 years ago
* Updated samtools requirement to samtools 0.1.6 (bug fixes in samtools).
Keith James
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over 14 years ago
* Completed docstrings for current API.
Keith James
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over 14 years ago
* Exported read-bam-terminator.
Keith James
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over 14 years ago
* Improved error message for truncated files.
Keith James
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over 14 years ago
* Bumped version.
Keith James
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over 14 years ago
* De novo BAM record creation now makes records that are byte-for-byte identical to those from samtools.
Keith James
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over 14 years ago
* Added make-alignment-record function to allow de novo creation of BAM records.
Keith James
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over 14 years ago
* Do not :use :deoxybyte-systems package.
Keith James
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over 14 years ago
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