GEMINI_genome_mining

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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 17, 2024 — Jul 17, 2025 Showing page 17 of 82 Search / Filter on:
re-order and fix column naming	Brent Pedersen (brentp)	More...				almost 10 years ago
+ output the number of filters that passed per-variant. + update the column names + always keep the gene name	Brent Pedersen (brentp)	More...				almost 10 years ago
Merge pull request #539 from brentp/comp_het_doc	Brent Pedersen - Bioinformatics	More...				almost 10 years ago
fix comphet docs	Brent Pedersen (brentp)	More...				almost 10 years ago
output per-gene and per-variant passes	Brent Pedersen (brentp)	More...				almost 10 years ago
Merge pull request #537 from brentp/max_aaf_all_fix	Brent Pedersen - Bioinformatics	More...				almost 10 years ago
fix max_aaf_all calculation using coalesce. previously, if any population was missing the variant, it would be set to -1 due to the way that MAX works in sqlite	Brent Pedersen (brentp)	More...				almost 10 years ago
Avoid use of tempdir for chunks when using IPython	chapmanb	More...				almost 10 years ago
fix case where 'gene' is not specified in requested columns.	Brent Pedersen (brentp)	More...				almost 10 years ago
new genewise tool. see #529	Brent Pedersen (brentp)	More...				almost 10 years ago
Merge branch 'master' of https://github.com/arq5x/gemini	Brent Pedersen	More...				almost 10 years ago
Merge pull request #533 from brentp/aaf_all_max	Aaron Quinlan	More...				almost 10 years ago
Merge branch 'arq5x_master' into aaf_all_max	Brent Pedersen (brentp)	More...				almost 10 years ago
Merge pull request #534 from brentp/smart_fam	Aaron Quinlan	More...				almost 10 years ago
use --families to limit queries before any work is done.	Brent Pedersen (brentp)	More...				almost 10 years ago
update history	Brent Pedersen (brentp)	More...				almost 10 years ago
add max_aaf_all column.	Brent Pedersen (brentp)	More...				almost 10 years ago
Merge pull request #532 from brentp/cyvcf2	Aaron Quinlan	More...				almost 10 years ago
bump cyvcf2 version and update history	Brent Pedersen (brentp)	More...				almost 10 years ago
speakerdeck	arq5x	More...				almost 10 years ago
update requirements, remove vestiges of previous loading mechanism	Brent Pedersen (brentp)	More...				almost 10 years ago
final fixes for cyvcf2	Brent Pedersen (brentp)	More...				almost 10 years ago
restore None for empty filter	Brent Pedersen (brentp)	More...				almost 10 years ago
update history	Brent Pedersen (brentp)	More...				almost 10 years ago
update to cyvcf2.	Brent Pedersen (brentp)	More...				almost 10 years ago
dont double-print message	Brent Pedersen (brentp)	More...				almost 10 years ago
update vcfs to meet stricter requirements from hstlib (spaces to tabs)	Brent Pedersen (brentp)	More...				almost 10 years ago
Merge branch 'master' of github.com:arq5x/gemini	arq5x	More...				almost 10 years ago
add tutorials	arq5x	More...				almost 10 years ago
more cyvcf2 stuff	Brent Pedersen (brentp)	More...				almost 10 years ago

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