GEMINI_genome_mining

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Analyzed about 11 hours ago. based on code collected about 11 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Sep 05, 2024 — Sep 05, 2025 Showing page 33 of 82 Search / Filter on:
try to support a dev branch work-flow	Brent Pedersen	More...				over 10 years ago
Merge pull request #412 from brentp/dev-install	Aaron Quinlan	More...				over 10 years ago
Merge pull request #413 from brentp/sanitize-esp	Aaron Quinlan	More...				over 10 years ago
remove comment	Brent Pedersen	More...				over 10 years ago
allow --gemini-version unstable to help in testing. @chapmanb , any obvious problems with this?	Brent Pedersen	More...				over 10 years ago
fix MAF calc	Brent Pedersen	More...				over 10 years ago
update test-pop to new testing format	Brent Pedersen	More...				over 10 years ago
update ESP, see #411 https://github.com/arq5x/gemini/issues/411	Brent Pedersen	More...				over 10 years ago
Merge pull request #410 from brentp/load-perf	Aaron Quinlan	More...				over 10 years ago
add tests	Brent Pedersen	More...				over 10 years ago
only create parser instances once	Brent Pedersen	More...				over 10 years ago
Merge pull request #408 from dgaston/master	Aaron Quinlan	More...				over 10 years ago
Add -classic instruction to normalize/annotate workflow in index.rst	Daniel Gaston	More...				over 10 years ago
code cleanup and minor speed improvements	Brent Pedersen	More...				over 10 years ago
fixup! use bed instead of bigwig because bx-python BigWig is slow.	Brent Pedersen	More...				over 10 years ago
use bed instead of bigwig because bx-python BigWig is slow.	Brent Pedersen	More...				over 10 years ago
Update index.rst	Aaron Quinlan	More...				over 10 years ago
Merge pull request #403 from brentp/query-performance	Aaron Quinlan	More...				over 10 years ago
precompile the eval expression to get another 2X speed improvement.	Brent Pedersen	More...				over 10 years ago
add lots of tests for the (gts).(phenotype==2)... type queries	Brent Pedersen	More...				over 10 years ago
can't be quite so lazy. need to get all columns if include_gt_columns is True	Brent Pedersen	More...				over 10 years ago
Merge branch 'query-performance' of github.com:brentp/gemini into query-performance	Brent Pedersen	More...				over 10 years ago
bump to 0.12.2	arq5x	More...				over 10 years ago
require cyvcf 0.1.13 because the .c file in 0.1.12 was stale	arq5x	More...				over 10 years ago
when indexing a dict by genotype (which is always 0...3) use a list instead of a dict. this improves speed in the remaining bottleneck which is (still) _group_samples_by_genotype.	Brent Pedersen (brentp)	More...				over 10 years ago
when indexing a dict by genotype (which is always 0...3) use a list instead of a dict. this improves speed in the remaining bottleneck which is (still) _group_samples_by_genotype.	Brent Pedersen (brentp)	More...				over 10 years ago
Merge commit '601c0a5' into query-performance	Brent Pedersen (brentp)	More...				over 10 years ago
short circuit some expensive ops	Brent Pedersen (brentp)	More...				over 10 years ago
short circuit some expensive ops	Brent Pedersen (brentp)	More...				over 10 years ago
cleanup	Brent Pedersen (brentp)	More...				over 10 years ago

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