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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Aug 18, 2024 — Aug 18, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
[ENH] support for genotype quals, ref_depths, and alt_depths.
arq5x
More... about 12 years ago
Merge pull request #158 from roryk/master
Aaron Quinlan
More... about 12 years ago
Add more useful error message if the database does not exist.
roryk
More... about 12 years ago
Merge branch 'master' of github.com:arq5x/gemini
arq5x
More... about 12 years ago
[DOCS] add warnings about the diff b/w VEP and snpEff
arq5x
More... about 12 years ago
Update requirements.txt
Aaron Quinlan
More... about 12 years ago
[ISS #155] allow mixture of spaces and no spaces between select columns
arq5x
More... about 12 years ago
Update requirements.txt
Aaron Quinlan
More... about 12 years ago
Merge pull request #152 from chapmanb/master
Aaron Quinlan
More... about 12 years ago
Merge pull request #147 from roryk/master
Aaron Quinlan
More... about 12 years ago
Fixes for reported installation issues: new version of ipython-cluster-helper with only IPython 0.13.2 requirement; better error message for missing configuration data; only require configured data when doing loading to allow other functionality to work without data files. Thanks to Amit Indap
chapmanb
More... about 12 years ago
Formatting fix.
Rory Kirchner
More... about 12 years ago
Formatting fix.
Rory Kirchner
More... about 12 years ago
Added documentation for --show-samples and --summarize.
roryk
More... about 12 years ago
Added slightly less awful naming.
roryk
More... about 12 years ago
Added --sumarize option to stats.
roryk
More... about 12 years ago
Added total, het and hom_alt columns to --show-variant-samples.
roryk
More... about 12 years ago
Merge pull request #150 from brentp/abspath
Aaron Quinlan
More... about 12 years ago
for install-data.py to write absolute path to the yaml even when run with a relative path.
Brent Pedersen
More... about 12 years ago
Added --show-variant-samples option to gemini_query
roryk
More... about 12 years ago
Update requirements.txt
Aaron Quinlan
More... about 12 years ago
Merge pull request #145 from chapmanb/master
Aaron Quinlan
More... about 12 years ago
Fixes for build issues: install bx-python via a separate command (fixes arq5x/gemini#143) and remove extra bottle.py in bin directory which gets double imported (speculative fix for arq5x/gemini#144)
chapmanb
More... about 12 years ago
[DOC] user must update PATH when auto installing
arq5x
More... about 12 years ago
minor docs tweak
arq5x
More... about 12 years ago
Update requirements.txt
Aaron Quinlan
More... about 12 years ago
Merge pull request #141 from chapmanb/master
Aaron Quinlan
More... about 12 years ago
Another go at an improved installer that handles numpy better. Revert use of system site packages, which caused more problems than it solved and instead install numpy separately. Add documentation on intermittent download errors.
chapmanb
More... about 12 years ago
Update requirements.txt
Aaron Quinlan
More... about 12 years ago
Merge pull request #140 from chapmanb/master
Aaron Quinlan
More... about 12 years ago