2
I Use This!
Activity Not Available
Analyzed over 2 years ago. based on code collected almost 3 years ago.

Project Summary

GNAT is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers. GNAT is available both for local download (suitable for large-scale processing) and as a web service (suitable for more limited processing or testing). A combination of local and remote processing is also available, where CPU-heavy operations are performed locally and memory-intensive operations are performed remotely (this is suitable for large-scale processing where a large amount of memory is not available). GNAT uses LINNAEUS (Gerner et al., 2010) for species detection and BANNER (Leaman et al., 2008) in one part of its false positive filtering process.

Tags

academic article articles bioinformatics classification contextualprofiles database entrez eutils gazeteers gazetteer gene genes java library mesh namedentityrecognition ncbi ner nlp normalization protein proteins publication pubmed species webservice web_services webservices

In a Nutshell, GNAT NER...

 No code available to analyze

Open Hub computes statistics on FOSS projects by examining source code and commit history in source code management systems. This project has no code locations, and so Open Hub cannot perform this analysis

Is this project's source code hosted in a publicly available repository? Do you know the URL? If you do, click the button below and tell us so that Open Hub can generate statistics! It's fast and easy - try it and see!

Add a code location

This Project has No vulnerabilities Reported Against it

Did You Know...

  • ...
    there are over 3,000 projects on the Open Hub with security vulnerabilities reported against them
  • ...
    by exploring contributors within projects, you can view details on every commit they have made to that project
  • ...
    use of OSS increased in 65% of companies in 2016
  • ...
    learn about Open Hub updates and features on the Open Hub blog

 No code available to analyze

Open Hub computes statistics on FOSS projects by examining source code and commit history in source code management systems. This project has no code locations, and so Open Hub cannot perform this analysis

Is this project's source code hosted in a publicly available repository? Do you know the URL? If you do, click the button below and tell us so that Open Hub can generate statistics! It's fast and easy - try it and see!

Add a code location

Community Rating

Be the first to rate this project
Click to add your rating
  
Review this Project!