| add more readtypes in apps.bwa.align() |
|
More...
|
over 10 years ago
|
| speedup assembly.ca.fasta() |
|
More...
|
over 10 years ago
|
| add stringency to projects.tgbs.track() |
|
More...
|
over 10 years ago
|
| add formats.sam.bed() |
|
More...
|
over 10 years ago
|
| add projects.tgbs.track() |
|
More...
|
over 10 years ago
|
| + Add annotation.pasa.consolidate() * allow reconciliation of multiple parallel PASA runs * identify SAME and DIFFERENT isoforms based on coordinate comparison * allow for slop in coordinate comparison (accounts for minor variation in terminal 5'/3' UTR features due to RNA-seq evidence) + Update `--children` param in formats.gff.extract() to allow control over number of iterations through GFF to extract (grand)child features |
|
More...
|
over 10 years ago
|
| fix genome names in compara.synteny.depth() |
|
More...
|
over 10 years ago
|
| add formats.gff.summary() |
|
More...
|
over 10 years ago
|
| add projects.misc.oropetium() |
|
More...
|
over 10 years ago
|
| remove label color in assembly.kmer.multihistogram() |
|
More...
|
over 10 years ago
|
| add polynomial fit in assembly.kmer.multihistogram() |
|
More...
|
over 10 years ago
|
| add assembly.kmer.multihistogram() |
|
More...
|
over 10 years ago
|
| Merge branch 'master' of github.com:tanghaibao/jcvi |
|
More...
|
over 10 years ago
|
| + Generalize annotation.reformat ACTIONs to accept organism prefix (Medtr, AT, etc.) + Club commonly used command line params in annotation.reformat ACTIONs |
|
More...
|
over 10 years ago
|
| add prefix grouping and maf in projects.tgbs.resolve() |
|
More...
|
over 10 years ago
|
| add projects.tgbs.HaplotypeResolver |
|
More...
|
over 10 years ago
|
| count haplotypes in projects.tgbs.resolve() |
|
More...
|
over 10 years ago
|
| process bam files in projects.tgbs.resolve() |
|
More...
|
over 10 years ago
|
| add projects.tgbs.resolve() |
|
More...
|
over 10 years ago
|
| fix option --sep in formats.fasta.format() |
|
More...
|
over 10 years ago
|
| add apps.align.blat() |
|
More...
|
over 10 years ago
|
| update copyright info |
|
More...
|
over 10 years ago
|
| add thousands in kmer counts; Happy new year 2015! |
|
More...
|
over 10 years ago
|
| use natsort_key in formats.fasta.summary() |
|
More...
|
over 10 years ago
|
| reflect the range in projects.ies.variation() to be non-negative |
|
More...
|
over 10 years ago
|
| modify score in annotation.qc.uniq() to include gene length |
|
More...
|
over 10 years ago
|
| don't run dedup for fragments by default in assembly.preprocess.correct() |
|
More...
|
over 10 years ago
|
| add --sizes in formats.bed.uniq() |
|
More...
|
over 10 years ago
|
| deprecate annotation.maker.longest() |
|
More...
|
over 10 years ago
|
| add annotation.qc.uniq() to uniq piles, similar to formats.gff.piles() w/ diff |
|
More...
|
over 10 years ago
|
