| rename projects.allmaps.allmapsQC to simulation() |
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almost 11 years ago
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| add xlabel in projects.allmaps.estimategaps() |
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almost 11 years ago
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| modify default component_type in formats.agp.OO() |
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almost 11 years ago
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| report marker density in assembly.allmaps.summary() |
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almost 11 years ago
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| add panel C in projects.allmaps.estimategaps() |
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almost 11 years ago
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| finished implementation of assembly.allmaps.estimategaps() |
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almost 11 years ago
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| compute gaps based on on mlg in assembly.allmaps.estimategaps |
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almost 11 years ago
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| mv GapEstimator to assembly.allmaps |
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almost 11 years ago
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| aesthetic improvement for projects.allmaps.estimategaps() |
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almost 11 years ago
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| add illustration for allmaps.estimategaps() |
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almost 11 years ago
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| Merge branch 'master' of github.com:tanghaibao/jcvi |
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almost 11 years ago
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| simplify ALLMAPS pipeline commandline args |
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almost 11 years ago
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| add --minaccn to formats.bed.filter() |
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almost 11 years ago
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| use upgraded samtools and bcftools in formats.sam |
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almost 11 years ago
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| + Fix parsing logic of psl block elements |
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almost 11 years ago
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| add option --strip_names to gff.format() |
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almost 11 years ago
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| fix graphics.landscape.heatmap() |
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about 11 years ago
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| mark up title in assembly.kmer.histogram() |
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about 11 years ago
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| place legend on top right for assembly.ks.histogram() |
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about 11 years ago
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| add formats.fastq.is_fastq() |
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about 11 years ago
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| automatically selects 63mer and 127mer based on K-mer size in assembly.soap |
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about 11 years ago
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| output novel IESs in projects.ies.variation() |
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about 11 years ago
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| add option --diversity in projects.ies.variation() |
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about 11 years ago
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| add projects.ies.variation() |
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about 11 years ago
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| automatically detect dual peaks in insert size distribution in formats.bed.pairs() |
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about 11 years ago
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| use dynamic cutoff based on outlier testing in projects.ies.deletion() |
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about 11 years ago
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| checkpoint in projects.ies.deletion() |
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about 11 years ago
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| make sure the labels don't crash the dotplot PDF |
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about 11 years ago
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| fix bug for self comparison in graphics.dotplot() when --skipempty is on |
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about 11 years ago
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| add option --skipempty in graphics.dotplot() |
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about 11 years ago
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