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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 17, 2024 — Aug 17, 2025 Showing page 57 of 103 Search / Filter on:
streamline AGP and FASTA construction in assembly.allmaps.build()	tanghaibao as Haibao Tang	More...				over 11 years ago
use seed in algorithms.tsp to get deterministic output	tanghaibao as Haibao Tang	More...				over 11 years ago
fix calculation of LG lengths in assembly.allmaps	tanghaibao as Haibao Tang	More...				over 11 years ago
seperate map anchoring code into assembly.allmaps	tanghaibao as Haibao Tang	More...				over 11 years ago
fix interface for algorithms.matrix.determine_signs()	tanghaibao as Haibao Tang	More...				over 11 years ago
use weighted average in orientation calculation in assembly.geneticmap	tanghaibao as Haibao Tang	More...				over 11 years ago
add dummy nodes at chr ends to assist scaffold ordering	tanghaibao as Haibao Tang	More...				over 11 years ago
use extreme function to be more robust to outliers in assembly.geneticmap	tanghaibao as Haibao Tang	More...				over 11 years ago
implement Iglewicz and Hoaglin's robust test for multiple outliers	tanghaibao as Haibao Tang	More...				over 11 years ago
allow weights to be incorporated in scaffold orientation in assembly.geneticmap	tanghaibao as Haibao Tang	More...				over 11 years ago
allow individual maps to be weighted before building the consensus	tanghaibao as Haibao Tang	More...				over 11 years ago
modify the distance function in assembly.geneticmap to be robust to outliers	tanghaibao as Haibao Tang	More...				over 11 years ago
write linkage as "map" in assembly.geneticmap.path()	tanghaibao as Haibao Tang	More...				over 11 years ago
add Maria to author list	tanghaibao as Haibao Tang	More...				over 11 years ago
Updated psl2gff converter to handle the conversion of coordinates of negative strand target hits	msarmien	More...				over 11 years ago
weight the sign array in assembly.geneticmap with # markers per scaffold	tanghaibao as Haibao Tang	More...				over 11 years ago
fix scaling in algorithms.tsp	tanghaibao as Haibao Tang	More...				over 11 years ago
try to autoscale weights in algorithms.tsp	tanghaibao as Haibao Tang	More...				over 11 years ago
implement ATSP in algorithms.tsp	tanghaibao as Haibao Tang	More...				over 11 years ago
make assembly.geneticmap.path() work on single genetic map as well	tanghaibao as Haibao Tang	More...				over 11 years ago
add assembly.pbjelly.spancount()	tanghaibao as Haibao Tang	More...				over 11 years ago
add algorithms.tsp.demo() to plot results of hamiltonian()	tanghaibao as Haibao Tang	More...				over 11 years ago
determine orientations in assembly.geneticmap.path()	tanghaibao as Haibao Tang	More...				over 11 years ago
remove distance threshold in assembly.geneticmap.ScaffoldOO	tanghaibao as Haibao Tang	More...				over 11 years ago
use concorde to solve scaffold order	tanghaibao as Haibao Tang	More...				over 11 years ago
implement DFJ constraints in algorithms.lpsolve.tsp()	tanghaibao as Haibao Tang	More...				over 11 years ago
use one fewer general variables in algorithms.lpsolve.tsp()	tanghaibao as Haibao Tang	More...				over 11 years ago
add algorithms.lpsolve.tsp() to solve Traveling Salesman Problem	tanghaibao as Haibao Tang	More...				over 11 years ago
Modify atg_name() regex to accommodate for new JGI naming scheme	vivekkrish as Vivek Krishnakumar	More...				over 11 years ago
return path instead of edgelist in algorithms.lpsolve.hamiltonian()	tanghaibao as Haibao Tang	More...				over 11 years ago

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