| add option --empty to graphics.chromosome |
|
More...
|
over 11 years ago
|
| MAJOR CHANGES: Renamed utils.sybase to utils.db, generalized the module to interface with multiple database backends (Sybase, MySQL, Postgres). MINOR CHANGES: Added in new regexps to annotation.ahrd based on recent GenBank Submission |
|
More...
|
over 11 years ago
|
| bump up LICENSE year to 2014; adjust graphics.paper.napus() panel position |
|
More...
|
over 11 years ago
|
| remove option --fasta in assembly.kmer.jellyfish() |
|
More...
|
over 11 years ago
|
| allow jellyfish to count a list of gzipped files |
|
More...
|
over 11 years ago
|
| write .groups file in expression.heterosis.prepare() |
|
More...
|
over 11 years ago
|
| dump counts into separate families in expression.heterosis |
|
More...
|
over 11 years ago
|
| add expression.heterosis |
|
More...
|
over 11 years ago
|
| add compara.synteny.mcscanq() to help highlight synteny lines |
|
More...
|
over 11 years ago
|
| replace graphics.paper.napusretention() with deletion() |
|
More...
|
over 11 years ago
|
| Add option to formats.gff.chain() to allow transferring the score field from the child features to the parent based on chosen score merging operation (sum, min, max, mean, collapse) |
|
More...
|
over 11 years ago
|
| Added formats.psl.bed() to convert psl directly to bed12 format; augmented formats.gff.chain() to allow transferring attributes from the child features to the chained parent feature; fixed all invocations of atg_name() within annotation.reformat |
|
More...
|
over 11 years ago
|
| add timestamp check in formats.sam.count() |
|
More...
|
over 11 years ago
|
| add formats.sam.count() |
|
More...
|
over 11 years ago
|
| add --symlink to apps.base.expand() |
|
More...
|
over 11 years ago
|
| handle cases where there are no segments in compara.fractionation.segment() |
|
More...
|
over 11 years ago
|
| add option --chain for compara.fractionation.segment() |
|
More...
|
over 11 years ago
|
| deprecate formats.Bed.resort() (use bed.sort() instead) |
|
More...
|
over 11 years ago
|
| Merge branch 'master' of github.com:tanghaibao/jcvi |
|
More...
|
over 11 years ago
|
| add graphics.paper.napus(), remove --auto from graphics.karyotype |
|
More...
|
over 11 years ago
|
| add formats.blast.subset() to extract hits by seqid; add formats.Bed.resort() to allow sorting bed using an arbitrary key |
|
More...
|
over 11 years ago
|
| allow graphics.karyotype to accept rotation parameter |
|
More...
|
over 11 years ago
|
| report na in assembly.automaton.count() |
|
More...
|
over 11 years ago
|
| simplify formats.blast.best() argument passing to sort() |
|
More...
|
over 11 years ago
|
| add assembly.automaton.cufflinks() |
|
More...
|
almost 12 years ago
|
| add compara.fractionation.offdiag() for the napus project |
|
More...
|
almost 12 years ago
|
| add compara.fractionation.diff() to estimate size differences between syntenic blocks |
|
More...
|
almost 12 years ago
|
| add compara.fractionation.segment() |
|
More...
|
almost 12 years ago
|
| Merge branch 'master' of github.com:tanghaibao/jcvi |
|
More...
|
almost 12 years ago
|
| change default canvas to 9x5 in graphics.paper.litchi() |
|
More...
|
almost 12 years ago
|
