C

canu

Settings | Report Duplicate

0

I Use This!

Low Activity

Commits : Listings

Analyzed about 7 hours ago. based on code collected about 7 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Sep 21, 2024 — Sep 21, 2025 Showing page 23 of 351 Search / Filter on:
Add shift-register emit(), fix printing of state, command line options.	Brian P. Walenz	More...				over 5 years ago
When ignoring reads, ignore in all copies of the metadata. Issue #1619.	Brian P. Walenz	More...				over 5 years ago
Disable trimming for hifi data, not needed w/new bogart updates and recent libraries	Sergey Koren	More...				over 5 years ago
Pass covgap and lopsided options to bogart	Sergey Koren	More...				over 5 years ago
Add kmerIterator interface to return something for every base; use that to report N bases in meryl-lookup output.	Brian P. Walenz	More...				over 5 years ago
Extend lookup to handle multiple DBs and multiple inputs, consolidate include/exclude to the same function.	Brian P. Walenz	More...				over 5 years ago
Set defaults for covGap and lopsided.	Brian P. Walenz	More...				over 5 years ago
Add a description of the algorithm.	Brian P. Walenz	More...				over 5 years ago
More faster and more correcter shift register searching.	Brian P. Walenz	More...				over 5 years ago
Add functions to expand pairs of bits to triples of bits.	Brian P. Walenz	More...				over 5 years ago
Skip the zeroth read in some loops.	Brian P. Walenz	More...				over 5 years ago
Add some extra logging, some disabled.	Brian P. Walenz	More...				over 5 years ago
Fix error computing how much of a potential bubble is covered by overlaps.	Brian P. Walenz	More...				over 5 years ago
Add a bunch of optimized versions for searching, realize that addition in GF(4) is xor. Lots of crud in this version though.	Brian P. Walenz	More...				over 5 years ago
Fix position estimates to avoid flipping/shrinking reads to less than 0	Sergey Koren	More...				over 5 years ago
Fix sneaky error checking fwrite() error codes. Issues #1600, #1603 and many others.	Brian P. Walenz	More...				over 5 years ago
Fix the shift register.	Brian P. Walenz	More...				over 5 years ago
Add debug option '-D bestOverlaps' to write an ovStore with the overlaps used for BestOverlapGraph.	Brian P. Walenz	More...				over 5 years ago
Add (secret) options for changing BestOverlapGraph parameters.	Brian P. Walenz	More...				over 5 years ago
Make the ovOverlap seqStore pointer private.	Brian P. Walenz	More...				over 5 years ago
Reset the ovOverlap seqStore pointer only if it's set in the ovStore.	Brian P. Walenz	More...				over 5 years ago
Increase error rate display to 3 digits (in pictures); fix type in command line usage.	Brian P. Walenz	More...				over 5 years ago
Move 'read alignment failure' log to 'algorithm debug' level output.	Brian P. Walenz	More...				over 5 years ago
Add a minimum length filter option.	Brian P. Walenz	More...				over 5 years ago
Add experimental filtering of short overlaps relative to read length.	Brian P. Walenz	More...				over 5 years ago
Fix settings when mixing pacbio and nanopore data, removed now obsolete data checks in correctreads.pm	Sergey Koren	More...				over 5 years ago
A thread aware class for writing log files.	Brian P. Walenz	More...				over 5 years ago
Make writeBuffer::flush() a public method.	Brian P. Walenz	More...				over 5 years ago
Fix memory rounding on LSF	Sergey Koren	More...				over 5 years ago
Remove references to 'suspicious' reads; these are coverage-gap reads now. Output a '-' for non-mutual-best edges in asm.best.edges (to preserve column indices for each row).	Brian P. Walenz	More...				over 5 years ago

←
1
2
…
19
20
21
22
23
24
25
26
27
…
350
351
→