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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Aug 30, 2024 — Aug 30, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Fixed bug in rendering of N's in mismatch mode. More... over 14 years ago
Reverting changes to Range so that Java serialization can read files created by Savant 1.4.4. Barf! Barf! Barf! More... over 14 years ago
Smarter error handling when user cancels the duplicate track dialog. DialogUtils now lets you specify title of input dialog (used to default to "Input"). More... over 14 years ago
Adding dist to repo for Big O More... over 14 years ago
Adding build to repo (for Orion :) More... over 14 years ago
Fixed some redraw issues switching from BAM to coverage and back. More... over 14 years ago
Smarter detection of "No data in range" conditions in continuous tracks. More... over 14 years ago
Tweaked drawing of top border of ruler where it is now exposed by reference-combo. More... over 14 years ago
Tweaked appearance of "More..." link on news items. More... over 14 years ago
News items can now have clickable links. More... over 14 years ago
NullPointerException if you decide you just want the genome's cytoband and none of its auxiliary tracks. More... over 14 years ago
UCSC plugin now sucks SQL plugin into its jar file. No longer has a dependency. More... over 14 years ago
Missing values in .wib files weren't being handled properly. More... over 14 years ago
At high resolutions points on continuous track should be drawn one base wide. More... over 14 years ago
More work on gene lookups. Appearance of SNP tracks improved. More... over 14 years ago
Fixed creation of name2 indices for UCSC gene files. Lookup by gene-name now available. More... over 14 years ago
Beefed up ColumnMapping class. Sequence track starts initially checked in load genome dialog. More... over 14 years ago
Changing genomes now opens and closes the associated auxiliary tracks. More... over 14 years ago
Replaced "Interval Options" panel with height slider More... over 14 years ago
Remove "Jump to mate" and "Select pair" when mate position invalid More... over 14 years ago
Show message "no data in range" when appropriate More... over 14 years ago
Updated BAM popup with select pair, jump to start/end More... over 14 years ago
Duplicate track when loading before genome More... over 14 years ago
Duplicate frame key error More... over 14 years ago
Sorting was broken on ReferenceCombo. More... over 14 years ago
Simply clicking on the RangeSelectionPanel should shift the display range without changing its length. More... over 14 years ago
Skips over bogus "browser" lines inserted by USCS at start of some Wig files. More... over 14 years ago
Better reporting of exceptions thrown during retrieveData. More... over 14 years ago
Generic interval tracks were still being given a .savant extension despite being formatted as Tabix. More... over 14 years ago
Cleanup of some unused listener/event classes. Continuous tracks now represent missing data as NaNs. More... over 14 years ago