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Inactive
Commits
: Listings
Analyzed
1 day
ago. based on code collected
1 day
ago.
Aug 30, 2024 — Aug 30, 2025
Showing page 27 of 61
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TrackUtils.createTrack can now throw Throwable.
Eric Smith
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over 14 years ago
Changes to GenericContinuousRecord.
Eric Smith
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over 14 years ago
- added banner to start page
Marc Fiume
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over 14 years ago
Resolving conflicts with Marc's library changes.
Eric Smith
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over 14 years ago
- send error reports directly - send feature requests directly - experimental: start page (disable in Savant.java)
Marc Fiume
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over 14 years ago
adding mail lib to repo
Marc Fiume
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over 14 years ago
Adding bigwig lib
Marc Fiume
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over 14 years ago
Support for reading TDF files.
Eric Smith
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over 14 years ago
Trimmed-down version of Broad Institute's TDF reader. Provides the minimal functionality to make TDF usable by Savant.
Eric Smith
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over 14 years ago
Restored DataFormatter progressListeners, which were removed due to an incomplete understanding of the code.
Eric Smith
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over 14 years ago
Updated SavantCore to build to new home of plugins: user.home
Marc Fiume
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over 14 years ago
Removed BED track auto-switch to squish
Andrew Brook
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over 14 years ago
Added javaws library
Andrew Brook
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over 14 years ago
Better reporting of cryptic SQLException when port is blocked.
Eric Smith
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over 14 years ago
Changes to make savant.sql plugin version 1.1.0.
Eric Smith
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over 14 years ago
Suppressed spurious repaints of the currently-selected track.
Eric Smith
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over 14 years ago
Exceptios from Picard are now unwrapped and presented in a more user-friendly fashion.
Eric Smith
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over 14 years ago
SVN - sucks very noticeably
Eric Smith
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over 14 years ago
I hate SVN
Eric Smith
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over 14 years ago
NullPointerException in IntervalTrack.getMaxValue() if you switch Generic Interval track to Arc Mode.
Eric Smith
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over 14 years ago
Added DataSource.getExtraData(). Added BigWigFormatter. Removed some necrotic code from DataFormatter. Fixed capitalisation of error messages on tracks. Fixed reference to javaws.jar for Mac build (this will break on Windows).
Eric Smith
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over 14 years ago
- Moved default plugin directory to ~/savant/plugins/ - Added ability to specify plugin urls as arguments (to be downloaded automatically)
Andrew Brook
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over 14 years ago
-Added ability to specify project url as argument -Projects now load genome using createTrack instead of createTrackSync
Andrew Brook
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over 14 years ago
Added mapping quality and base quality strings to BAM popup as per Aparna's request
Marc Fiume
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over 14 years ago
Fixed bug where BED files having whitespace as delimiter (not tabs) were not formatting properly
Marc Fiume
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over 14 years ago
Gene tracks store their blocks relative to the start of the chromosome, not the start of the gene.
Eric Smith
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over 14 years ago
Fixed capitalisation of "zoom in" message.
Eric Smith
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over 14 years ago
Fixed capitalisation of "zoom in" message.
Eric Smith
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over 14 years ago
DataFormatterThread now catches Throwable rather than Exception so that we can (sometimes) report OutOfMemory errors.
Eric Smith
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over 14 years ago
DataFormatterThread now catches Throwable rather than Exception so that we can (sometimes) report OutOfMemory errors.
Eric Smith
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over 14 years ago
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