Xolotl Plasma-Surface Interactions

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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Sep 03, 2024 — Sep 03, 2025 Showing page 15 of 20 Search / Filter on:
Added 1V to the diminutive tungsten benchmark file. ~JJB 20131021 14:54	jayjaybillings	More...				almost 12 years ago
Committing torn apart solver for Jacobian work. ~JJB 20131018 16:59	jayjaybillings	More...				almost 12 years ago
Fixed a bug in RHSFunction where the reactant index was not properly computed. ~JJB 20131012 14:15	jayjaybillings	More...				almost 12 years ago
Minor documentation fixes and cleanup of an unncessary line. ~JJB 20131012 13:23	jayjaybillings	More...				almost 12 years ago
Disabled the reaction connectivity terms (diagonal fill) so that I can work out the issues with diffusion (off-diagonal fill) first. ~JJB 20131012 13:10	jayjaybillings	More...				almost 12 years ago
I think I fixed some of the indexing issues in the Jacobian and I am now double checking all of the connectivity calculations for single interstitials. Build works, but computation is still broken. ~JJB 20131012 13:07	jayjaybillings	More...				almost 12 years ago
Committing partially committed work on fixing the Jacobian. I also fixed indexing bugs in the ReactionNetwork and PetscSolver and a couple of small bugs. ~JJB 20131012 11:21	jayjaybillings	More...				almost 12 years ago
Fixed a bug in the mixed clusters where they would calculate dissociation constants even if He, V and I were not in the network. Fixed the ordering of the jacobian and dfill matrices to be column-major for PETSc. ~JJB 20131010 17:03	jayjaybillings	More...				almost 12 years ago
Committing small, tiny and diminutive tungsten benchmark files. ~JJB 20131010 17:01	jayjaybillings	More...				almost 12 years ago
Committing fixed Jacobian calculation. ~JJB 20130923 15:03	jayjaybillings	More...				almost 12 years ago
Finished first pass at the RHSJacobian function. There are memory errors to fix. ~JJB 20130920 11:02	jayjaybillings	More...				almost 12 years ago
Started the necessary refactor due to Barry's Jacobian updates. ~JJB 20130919 22:22	jayjaybillings	More...				almost 12 years ago
Added support for computing partial derivatives of one cluster with respect to the others. ~JJB 20130919 21:09	jayjaybillings	More...				almost 12 years ago
Changed getConnectivity() so that it returns the connectivity by value and takes advantage of move semantics. ~JJB 20130919 15:33	jayjaybillings	More...				almost 12 years ago
Fixed a couple more small bugs related to computing the updated concentrations. ~JJB 20130909 14:17	jayjaybillings	More...				almost 12 years ago
Fixed a bug that prevented the concentrations of He from increasing appropriately. ~JJB 20130910 13:49	jayjaybillings	More...				almost 12 years ago
Fixed a bug that caused the concentrations to always be zero. ~JJB 20130910 12:18	jayjaybillings	More...				almost 12 years ago
Removed debug output from PetscSolver.cpp since I learned that IT'S ALIVE! ~JJB 20130909 16:59	jayjaybillings	More...				almost 12 years ago
Fixed a bug in HeVCluster.cpp where the proper cluster was being checked, but the wrong cluster added to the list of combining reactants. Fixed a missing minus sign in the definition of k_minus. ~JJB 20130909 16:48	jayjaybillings	More...				almost 12 years ago
Finished array conversion. Xolotl runs its first complete timestep with the Tungsten problem! ~JJB 20130909 13:48	jayjaybillings	More...				almost 12 years ago
Updated the ReactionNetwork to handle concentration transfer to and from C arrays. Updated the PSIClusterNetworkTester to test it. Removed the ReactionNetworkTester since it wasn't testing anything. ~JJB 20130909 11:25	jayjaybillings	More...				almost 12 years ago
Added a new test for the PetscSolver so that I can put the conversion routines under test. ~JJB 20130908 15:10	jayjaybillings	More...				almost 12 years ago
Committing the latest. It sorta works... not really, but maybe. I don't know. ~JJB 20130906 15:22	jayjaybillings	More...				almost 12 years ago
Worked out a few small bugs. Still crashing, but at least now it is in the xolotlCore. ~JJB 20130906 08:25	jayjaybillings	More...				almost 12 years ago
Fixed a small indexing bug. I say small, but it would have pissed me off royally tomorrow. ~JJB 20130906 00:20	jayjaybillings	More...				almost 12 years ago
Committing what I have for the night. I had everything working with PSIClusterReactionNetwork, but then I tried to create custom transfer arrays and now it is all messed up. ~JJB 20130906 00:13	jayjaybillings	More...				almost 12 years ago
Still putting up the good fight. Part way through IFunction. ~JJB 20130905 18:11	jayjaybillings	More...				almost 12 years ago
Finished setupInitialConditions(). ~JJB 20130905 13:48	jayjaybillings	More...				almost 12 years ago
PetscSolver is almost converted to use the new network. I am working on a bug in setupInitialConditions before moving on to IFunction. ~JJB 20130904 18:29	jayjaybillings	More...				almost 12 years ago
After a long fight that included upping the size of the hash table and fixing a million bugs, TungstenIntegrationTester runs to completion with a debug time of 14.093 seconds and a release time of 5.725 seconds for an average setup time of 0.837 ms per cluster in release mode. ~JJB 20130903 16:49	jayjaybillings	More...				about 12 years ago

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