Tags : Browse Projects

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GNAT NER

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  Analyzed about 2 months ago

GNAT is a library and web service capable of performing gene entity NER and normalization of biomedical articles. Mentions of genes and proteins in the articles are linked to to Entrez Gene identifiers. GNAT is available both for local download (suitable for large-scale processing) and as a web ... [More] service (suitable for more limited processing or testing). A combination of local and remote processing is also available, where CPU-heavy operations are performed locally and memory-intensive operations are performed remotely (this is suitable for large-scale processing where a large amount of memory is not available). GNAT uses LINNAEUS (Gerner et al., 2010) for species detection and BANNER (Leaman et al., 2008) in one part of its false positive filtering process. [Less]

29.8K lines of code

1 current contributors

12 months since last commit

2 users on Open Hub

Activity Not Available
0.0
 
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Licenses: No declared licenses

BioMart

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  Analyzed 12 months ago

BioMart is a query-oriented data management system developed jointly by the European Bioinformatics Institute (EBI) and Cold Spring Harbor Laboratory (CSHL). The system can be used with any type of data and comes with a range of query interfaces and administration tools, including 'out of the ... [More] box' website that can be installed, configured and customised according to requirements. The system simplifies the task of creation and maintenance of advanced query interfaces backed by a relational database and it is particularly suited for providing the 'data mining' like searches of complex descriptive (e.g. biological) data. BioMart can work with existing data repositories by converting them to a required BioMart format as well as newly created databases. [Less]

106K lines of code

0 current contributors

over 8 years since last commit

2 users on Open Hub

Activity Not Available
4.0
   
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MOLGENIS model-driven database platform

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  Analyzed over 2 years ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

498K lines of code

0 current contributors

over 4 years since last commit

1 users on Open Hub

Activity Not Available
4.0
   
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Licenses: No declared licenses

FlyGATE

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  Analyzed about 6 years ago

FlyGATE is a knowledge database dedicated to the transposable element (TEs) sequences of the Drosophila melanogaster genome.

40.2K lines of code

0 current contributors

over 8 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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PPI Benchmark

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  Analyzed almost 4 years ago

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

721K lines of code

2 current contributors

over 4 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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Licenses: No declared licenses

jbiowh

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  Analyzed about 1 year ago

An open-source framework for biological data integration

302K lines of code

0 current contributors

over 2 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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Licenses: No declared licenses

rnavirusdb

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  Analyzed about 1 year ago

A web site supporting access to a database of RNA viruses, with tools for query and alignment.

3.47K lines of code

0 current contributors

about 8 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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prestomic

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  Analyzed about 1 year ago

This program presents proteomics data (protein and peptide sequences) in a user-friendly way. Typically, the peptide sequences are found with a mass spectrometer, and the protein sequences are found by sequencing a genome.

1.15K lines of code

0 current contributors

over 10 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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neark

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  Analyzed about 1 year ago

Will type later.

2.01K lines of code

0 current contributors

about 9 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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vardbdev

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  Analyzed about 1 year ago

A web database and bioinformatics analysis tool for gene families involved in antigenic variation and immune system evasion in pathogens.

0 lines of code

0 current contributors

over 8 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: LGPL