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Analyzed 2 days ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 24, 2024 — Aug 24, 2025 Showing page 84 of 114 Search / Filter on:
vcf: bcf_hdr_get_hrec() interface made more general	Petr Danecek	More...				about 11 years ago
vcf: Expose bcf_hdr_sync() and hrec_add_idx()	Petr Danecek	More...				about 11 years ago
On open failure, set errno instead of printing message	John Marshall	More...				about 11 years ago
Expose bcf_hdr_parse	Petr Danecek	More...				about 11 years ago
Files under cram/ are BSD-licensed	John Marshall	More...				about 11 years ago
Fix copy/pasto	John Marshall	More...				about 11 years ago
Add MIT/Expat license boilerplate	John Marshall	More...				about 11 years ago
Add license file	John Marshall	More...				about 11 years ago
vcf: Support for mpileup's symbolic <X> allele	Petr Danecek	More...				about 11 years ago
Merge REF_PATH fixes and libcurl removal (PR #111)	John Marshall	More...				about 11 years ago
Suppress compression suffix search on default EBI MD5 service	John Marshall	More...				about 11 years ago
faidx: Exit with an error if run on gzip-ed files	Petr Danecek	More...				about 11 years ago
bcf_hdr_combine: Check for tags of conflicting lengths	Petr Danecek	More...				about 11 years ago
bgzf: Translate windows line endings	Petr Danecek	More...				about 11 years ago
synced_reader: Logical complements of target regions	Petr Danecek	More...				about 11 years ago
vcf: Detect broken structured header lines	Petr Danecek	More...				about 11 years ago
Fixed REF_PATH to handle URLs better.	James Bonfield	More...				about 11 years ago
Merge pull request #108 from MauricioCarneiro/develop	pd3	More...				about 11 years ago
synced_reader: Consider non-variant sites as matching in comparisons	Petr Danecek	More...				about 11 years ago
Improved bug fix of bcf1_sync() from the commit 2504243:	Petr Danecek	More...				about 11 years ago
Fix in index initialization	Petr Danecek	More...				about 11 years ago
Fixed bug in bcf1_sync. The main cause of the bug is as follows: bcf_unpack(bcf_rec, BCF_UN_STR); bcf_update_id(bcf_rec, id); This causes bcf_rec->d.shared_dirty to be set. duplicate = bcf_dup(bcf_rec); This calls bcf1_sync(). Since bcf_rec->d.shared_dirty is set, the shared data is re-created in tmp.s, bcf_rec->shared.s is freed and bcf_rec->shared.s = tmp.s. However, bcf_rec->unpack_ptr and bcf_rec->d.info[i].vptr still point to the old shared.s region which is invalidated. The fix is done by assigning bcf_rec->unpack_ptr and the vptr fields after tmp.s is fully constructed in bcf1_sync. I use unpack_offset and offset_array to track the offsets of these fields with respect to tmp.s	Karthik Gururaj	More...				about 11 years ago
bcf_update_alleles: Reference length with INFO/END	Petr Danecek	More...				about 11 years ago
bcf_trim_als: Propagate error instead of assert	Petr Danecek	More...				about 11 years ago
Add extern "C" around API to enable C++ linking	Joel Thibault	More...				about 11 years ago
vcf: Fix bcf_hdr_id2hrec, col_type parameter is needed as well	Petr Danecek	More...				about 11 years ago
bgzf: Do not end prematurely on non-critical Z_BUF_ERROR zlib error	Petr Danecek	More...				about 11 years ago
vcf: Fixes in bcf_translate	Petr Danecek	More...				about 11 years ago
vcf: Fix BCF syncing when only partially unpacked	Petr Danecek	More...				about 11 years ago
vcf_parse: Detect incorrect number of columns	Petr Danecek	More...				about 11 years ago

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