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Analyzed about 14 hours ago. based on code collected about 14 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 16, 2024 — Aug 16, 2025 Showing page 88 of 114 Search / Filter on:
vcf: Allow omitted trailing FORMAT fields	Petr Danecek	More...				over 11 years ago
Fix sam_format1 failure on lines ending in integer/float tags and issue #63	Rob Davies	More...				over 11 years ago
Fixed a bug when loading in fasta files consisting of all sequence on a single line and in lowercase.	James Bonfield	More...				over 11 years ago
Merge #70, fetching of remote BAM/VCF indices	John Marshall	More...				over 11 years ago
Use hFILE rather than knet in test_and_fetch()	John Marshall	More...				over 11 years ago
fix remote fetching of regions for bam and vcf	Shane McCarthy	More...				over 11 years ago
Add "data:blahblah" in-memory hFILE backend (read-only)	John Marshall	More...				over 11 years ago
Add 'a' (append) mode letter; propagate mode letters	John Marshall	More...				over 11 years ago
Merge #68, fix incorrect length given to MD5 calculation	John Marshall	More...				over 11 years ago
Add HTS_IDX_NONE and document HTS_IDX_*	John Marshall	More...				over 11 years ago
Fixes incorrect MD5 calculation in cram_write_SAM_hdr	Rob Davies	More...				over 11 years ago
Keep the style of the surrounding code	John Marshall	More...				over 11 years ago
Ignore operation-not-supported errors in fd_flush	Petr Danecek	More...				over 11 years ago
More sensible Quals of matching bases in overlaps	Petr Danecek	More...				over 11 years ago
bcf_translate: Catch unchecked errors	Petr Danecek	More...				over 11 years ago
Check cram_eof() before calling cram_close()	John Marshall	More...				over 11 years ago
synced_reader: New bcf_sr_region_done macro	Petr Danecek	More...				over 11 years ago
Merge pull request #62, minor CRAM updates	John Marshall	More...				over 11 years ago
Make synced reader aware of bcf_hdr_set_sample(), expanded docs	Petr Danecek	More...				over 11 years ago
hts_idx_load: Print warning when index is older than data	Petr Danecek	More...				over 11 years ago
To avoid confusion, make bcf_get__int and bcf_update__int symetric	Petr Danecek	More...				over 11 years ago
Reduced the number of realloc calls zlib_mem_inflate(), while hopefully not overallocating much either.	James Bonfield	More...				over 11 years ago
Merge pull request #60, CRAM EOF block improvements	John Marshall	More...				over 11 years ago
hts_expand0: type ptr properly, it can be of different type	Petr Danecek	More...				over 11 years ago
vcf: Don't let unpack_*_core forget the to-be-freed pointer	Petr Danecek	More...				over 11 years ago
vcf: Abort on broken VCFs with multiple/trailing spaces/tabs	Petr Danecek	More...				over 11 years ago
Bug fix to the SAM header padding. It could go negative and then fail to write the header.	James Bonfield	More...				over 11 years ago
Fixed EOF check. The usual code path had the correct check, but an empty cram triggered the incorrect code.	James Bonfield	More...				over 11 years ago
The default CRAM version is now 2.1. This is now the official release for supporting EOF blocks and the Java implementation only enforces them for CRAM 2.1 and above.	James Bonfield	More...				over 11 years ago
Merge pull request #46, CRAM EOF blocks	John Marshall	More...				over 11 years ago

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