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Low Activity
Commits
: Listings
Analyzed
1 day
ago. based on code collected
1 day
ago.
Sep 07, 2024 — Sep 07, 2025
Showing page 59 of 351
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Skip the histograms if there are no reads. And tidy up a bit.
Brian P. Walenz
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over 7 years ago
Don't crash if all mers are unique. Minor code cleanup too.
Brian P. Walenz
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over 7 years ago
Detect if no corrected or trimmed reads immediately after loading into gkpStore.
Brian P. Walenz
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over 7 years ago
If no corrected or trimmed reads are made, stop gracefully.
Brian P. Walenz
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over 7 years ago
Fix slightly misleading comment.
Brian P. Walenz
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over 7 years ago
If the inputs for an output don't exist, make an empty output file.
Brian P. Walenz
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over 7 years ago
Report if no corrected/trimmed reads were generated.
Brian P. Walenz
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over 7 years ago
Report the correct histogram when no reads of the selected type exist.
Brian P. Walenz
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over 7 years ago
Don't show histogram lines for lengths below the minimum read length present.
Brian P. Walenz
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over 7 years ago
Update faq.rst
Sergey Koren
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over 7 years ago
Allow access to filename for CompressedFileReader and CompressedFileWriter.
Brian P. Walenz
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over 7 years ago
Increase minimum memory requirements; generally 4 GB now.
Brian P. Walenz
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over 7 years ago
Gah! Initialize the _ignore flag to false.
Brian P. Walenz
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over 7 years ago
Don't complain if there are no overlaps in the setRange() range. Also blow up if the overlap points to invalid data.
Brian P. Walenz
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over 7 years ago
When closing a new store, warn if there are no overlaps in it.
Brian P. Walenz
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over 7 years ago
Don't fail just because there are no overlaps to load.
Brian P. Walenz
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over 7 years ago
Don't fail if there are no overlaps; just output singletons.
Brian P. Walenz
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over 7 years ago
Make a bigger warning that there are no reads in the store, but still end successfully.
Brian P. Walenz
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over 7 years ago
Disable OEA if there are no overlaps in need of adjusted error rates.
Brian P. Walenz
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over 7 years ago
Add a newline between an output file name and the 'fi' closing an if statement.
Brian P. Walenz
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over 7 years ago
Replace MIN with min and MAX with max.
Brian P. Walenz
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over 7 years ago
Replace TRUE with true and FALSE with false.
Brian P. Walenz
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over 7 years ago
Templateify AS_UTL_decodeRange(), add generic strtonumber() that does the right thing.
Brian P. Walenz
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over 7 years ago
Remove 'sequence'; it's in the meryl repo now.
Brian P. Walenz
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over 7 years ago
Update quick-start.rst
Arang Rhie
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over 7 years ago
Add readSamplingCoveragae and readSamplingBias, to sample reads once they're loaded into gkpStore.
Brian P. Walenz
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over 7 years ago
Slightly change interface to getting read length; needed to support 'ignore' in next commit.
Brian P. Walenz
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over 7 years ago
Add an invalid read to the read list, so it isn't empty.
Brian P. Walenz
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over 7 years ago
Create the counts file even if there are no overlaps.
Brian P. Walenz
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over 7 years ago
Fail if neither -create or -describe is supplied.
Brian P. Walenz
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over 7 years ago
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