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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Sep 07, 2024 — Sep 07, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Skip the histograms if there are no reads. And tidy up a bit. More... over 7 years ago
Don't crash if all mers are unique. Minor code cleanup too. More... over 7 years ago
Detect if no corrected or trimmed reads immediately after loading into gkpStore. More... over 7 years ago
If no corrected or trimmed reads are made, stop gracefully. More... over 7 years ago
Fix slightly misleading comment. More... over 7 years ago
If the inputs for an output don't exist, make an empty output file. More... over 7 years ago
Report if no corrected/trimmed reads were generated. More... over 7 years ago
Report the correct histogram when no reads of the selected type exist. More... over 7 years ago
Don't show histogram lines for lengths below the minimum read length present. More... over 7 years ago
Update faq.rst More... over 7 years ago
Allow access to filename for CompressedFileReader and CompressedFileWriter. More... over 7 years ago
Increase minimum memory requirements; generally 4 GB now. More... over 7 years ago
Gah! Initialize the _ignore flag to false. More... over 7 years ago
Don't complain if there are no overlaps in the setRange() range. Also blow up if the overlap points to invalid data. More... over 7 years ago
When closing a new store, warn if there are no overlaps in it. More... over 7 years ago
Don't fail just because there are no overlaps to load. More... over 7 years ago
Don't fail if there are no overlaps; just output singletons. More... over 7 years ago
Make a bigger warning that there are no reads in the store, but still end successfully. More... over 7 years ago
Disable OEA if there are no overlaps in need of adjusted error rates. More... over 7 years ago
Add a newline between an output file name and the 'fi' closing an if statement. More... over 7 years ago
Replace MIN with min and MAX with max. More... over 7 years ago
Replace TRUE with true and FALSE with false. More... over 7 years ago
Templateify AS_UTL_decodeRange(), add generic strtonumber() that does the right thing. More... over 7 years ago
Remove 'sequence'; it's in the meryl repo now. More... over 7 years ago
Update quick-start.rst More... over 7 years ago
Add readSamplingCoveragae and readSamplingBias, to sample reads once they're loaded into gkpStore. More... over 7 years ago
Slightly change interface to getting read length; needed to support 'ignore' in next commit. More... over 7 years ago
Add an invalid read to the read list, so it isn't empty. More... over 7 years ago
Create the counts file even if there are no overlaps. More... over 7 years ago
Fail if neither -create or -describe is supplied. More... over 7 years ago