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Commits : Listings

Analyzed about 11 hours ago. based on code collected about 11 hours ago.
Aug 18, 2024 — Aug 18, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Remove dead code from dumping old falconsense inputs. More... over 7 years ago
Write to stdout a log of the reads corrected and regions with valid corrections. More... over 7 years ago
Skip reads with no correction layout. More... over 7 years ago
Disable excessive logging. More... over 7 years ago
For useGrid=remote, note that jobSubmit.sh needs to be run from the directory it is in. More... over 7 years ago
Fix 'no quality output' - use the correct sequence length for copying QVs from the integer vector to the character string. More... over 7 years ago
Remove a few stray newlines. More... over 7 years ago
Consolidate the two 'Finished' log messages into one function. More... over 7 years ago
A whole mess of object-store fixes, and some others too. More... over 7 years ago
Add readSamplingCoverage and readSamplingBias. More... over 7 years ago
Allow loading of just the overlap count data, no ovb needed. More... over 7 years ago
Make snappy support non-optional. More... over 7 years ago
Explicitly call generateReport() - instead of having it in emitStage() - to get around circular dependency in Grid_Cloud.pm. More... over 7 years ago
Be even more helpful when reporting execution times. More... over 7 years ago
Remove extraneous $path. More... over 7 years ago
Skip header lines from sqStoreDumpMetaData. More... over 7 years ago
Report and remove the correct .err file for loadTrimmedReads. More... over 7 years ago
Don't truncate the histogram display. More... over 7 years ago
closedir() and DIR, not a DOR. More... over 7 years ago
Fix errors in string catenation and using strings as integers. More... over 7 years ago
Remove several multiply-declared variables. More... over 7 years ago
Remove prototype from recursive function. More... over 7 years ago
Add forward prototype for recursive function. More... over 7 years ago
Cleanup use statements to make them more similar and complete and less redundant. More... over 7 years ago
Remove extra variable declaration. More... over 7 years ago
Remove stray export 'overlap'. More... over 7 years ago
Turn on perl warnings. More... over 7 years ago
Cosmetic: change GKSTORE symbol/logging to SQSTORE. More... over 7 years ago
Explicitly ignore merges to orphans that have been merged already. More... over 7 years ago
Fix failure parsing ranges with more than one range. More... over 7 years ago