| * package-list.xml (Repository): supplementary resource file to define the order of packages and _assnlist's in packages |
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almost 24 years ago
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| usual |
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almost 24 years ago
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| * MAGE-ML.dtd (Repository): Added dimensions to <BioAssayData> in the order: 1) BioAssayDimension 2) DesignElementDimension 3) QuantitationTypeDimension Removed <DataInternal*> Removed <DataExternal*> |
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almost 24 years ago
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| * MAGE.xmi (Repository): Added three attributes to BioDataCube: - filenameURI - dataFormat - dataFormatInfoURI Made association from BioAssayData -> BioDataValues navigable, and named it bioAssayData, with cardinality 1..1, rank 1 |
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almost 24 years ago
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| Fixed a bug I created in my association list settr generator. In the previous version it was generating list appending code for both 1 to n (list) and 1 to 1 associations. |
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almost 24 years ago
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| List inner classes were not being instantiated in the package files. |
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almost 24 years ago
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| *** empty log message *** |
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almost 24 years ago
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| moved MAGE hrefs to prdownloads |
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almost 24 years ago
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| added new link for Perl API |
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almost 24 years ago
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| usual |
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almost 24 years ago
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| * create-mage-classes.pl (Repository): Added --res for using an external resource file Added --tests for forcing t/* script regeneration Attempted to speed up make by removing unneeded targets, but it doesn't seem to do anything Now uses IxHash interface for package lists and associations because we need a hash table that maintains insertion order Associations now ordered using rank constraints in XMI MAGE.pm now uses identifier attribute MAGE.pm now has ':ALL' export tag that signals that all modules should be 'required' Added tagname() class method Added package() class method Better comments on method return types Packages modules now have tests Packages modules got mageml_lists() and class2list() methods now use Deepcopy() for Data::Dumper to ensure that we don't get re-use of references since it broke cache file re-use We grab the old CVS version string for the file and re-use it. Michael defined the order of associations to be superclass first, so associations() needed fixing package() and class_name() now get tested xml writer support added using Bio::MAGE::register(), Bio::MAGE::add_objects(), and Bio::MAGE::obj2mageml() |
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almost 24 years ago
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| * XMI.pm (Repository): Added association constraints for capturing the rank info |
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almost 24 years ago
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| Added Submission Document |
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almost 24 years ago
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| Needed to instantiate the enumeration inner class for lookup logic to work. Also changed the attr constructor to use the new nameToValue lookup map in the enumeration class. |
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almost 24 years ago
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| Added name-to-value lookup functionality to the enumeration inner class. This required adding code to the enumeration inner class and then to force instantiation of the class. This may not be the best way to do it but it's easy enough to change if people have a better idea. |
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almost 24 years ago
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| Robert Hubley: 12/08/01 Makefile for building java file. This is just a quick before I can get an ANT file up. |
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almost 24 years ago
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| * MAGE-ML.dtd (Repository): Hand modified until we get Michael's latest code Fixed BQS to have BibliographicReferences_assnlist Unit:unitName is now #IMPLIED |
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almost 24 years ago
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| PNG link fix |
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almost 24 years ago
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| Added PNG image link |
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almost 24 years ago
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| Robert Hubley: 12/07/01 |
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almost 24 years ago
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| Robert Hubley: December 7th |
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almost 24 years ago
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| usual |
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almost 24 years ago
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| * main.inc (Message): sight => site typo |
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almost 24 years ago
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| fixed URL typo |
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almost 24 years ago
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| added a home for SF |
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almost 24 years ago
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| added more files |
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almost 24 years ago
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| added more info on MAGE.xmi |
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almost 24 years ago
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| new |
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almost 24 years ago
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| typo fix |
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almost 24 years ago
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| Initial revision |
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almost 24 years ago
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