M

mged

Settings | Report Duplicate

1

I Use This!

Inactive

Commits : Listings

Analyzed about 4 hours ago. based on code collected about 10 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 18, 2024 — Aug 18, 2025 Showing page 34 of 35 Search / Filter on:
usual	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): <FeatureReporterMap> got a <Reporter_ref> <ReporterCompositeMap> got a <CompositeSequence_ref> <CompositeCompositeMap> got a <CompositeSequence_ref>	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): 1) Removed duplicates (Paul): <!ENTITY % BioAssayCreation_content "%BioEvent_content;" > <!ENTITY % BioAssayCreation_attrs "%BioEvent_attrs;" > <!ENTITY % BioAssayTreatment_content "%BioEvent_content;" > <!ENTITY % BioAssayTreatment_attrs "%BioEvent_attrs;" > 2) Made ProtocolApplication_list optional (Derek/Steve) <!ENTITY % BioEvent_content "%Identifiable_content;, ProtocolApplication_list?" > 3) Made start and end attributes #IMPLIED (Derek/Steve) <!ENTITY % SequencePosition_attrs " %Extendable_attrs; start CDATA #IMPLIED end CDATA #IMPLIED" > 4) Added ReporterGroup_list and CompositeGroup_list (Derek/Steve) <!ELEMENT ArrayDesign_package (ReporterGroup_list?, CompositeGroup_list?, ArrayDesign_list?) > <!ELEMENT ReporterGroup_list (ReporterGroup+) > <!ELEMENT CompositeGroup_list (CompositeGroup+) > <!ELEMENT ArrayDesign_list ((%ArrayDesign_classes;)+) > 5) Added SequenceDatabase_list (Michael) <!ELEMENT SequenceDatabase_list (DatabaseEntry+) > ... <!ELEMENT BioSequence (%Identifiable_content;, SequenceDatabase_list?, OntologyEntry_list?, PolymerType, Type, Species?, SeqFeature_list?) >	jester as jason_e_stewart	More...				almost 24 years ago
usual	jester as jason_e_stewart	More...				almost 24 years ago
Initial revision	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): <Feature_list> corrected to have content (Feature+)	jester as jason_e_stewart	More...				almost 24 years ago
usual	jester as jason_e_stewart	More...				almost 24 years ago
* examples/BioMaterial_package.xml (Repository): * examples/BioAssay_package.xml (Repository): * examples/AuditAndSecurity_package.xml (Repository): * MAGE-ML.dtd (Repository): Rearranged <MAGE-ML>, <Array_package>, <AuditAndSecurity_package>, <BioAssay_package>, and <BioMaterial_package> so that sub-elements are listed in dependency order	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): Changed spelling on %unit_content; to %Unit_content; Added URI attr to <Image>	jester as jason_e_stewart	More...				almost 24 years ago
* examples/AuditAndSecurity_package.xml (Repository): removed affilitation attribute	jester as jason_e_stewart	More...				almost 24 years ago
minor formatting, added <?xml line, correct dtd location	jester as jason_e_stewart	More...				almost 24 years ago
* examples/BioMaterial_package.xml (Repository): New example from Paul	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): Fixed Unit class inheritance by making %Unit_{classes, content, attrs}. Move <Person> and <Organization> attributes to <Contact> Added optional <Unit> to parameter Added value attribute to <ParameterValue> Made <CompoundMeasurement_list> optional in <Treatment>	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): <SequencePosition> was made Extendable Added <CompositeGroup_reflist> In <CompositeSequence>, changed <ReporterComposite_reflist> to <ReporterCompositeMap_reflist> Added <ReporterGroup_reflist> Added <FeatureGroup_list> In <SourceQuantitationType_reflist> changed QuantitationType_ref, to %QuantitationType_ref;	jester as jason_e_stewart	More...				almost 24 years ago
* examples/Protocol_package.xml (Repository): Fixed <Software> to not have version attr	jester as jason_e_stewart	More...				almost 24 years ago
fixed DOCTYPE	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): Renamaded <NameValueType_list> to <PropertySet_list> <Audit> made Describable <ExternalReference> made Extendable <OntologyEntry> made Extendable <DatabaseEntry> made Extendable <SequencePosition> made Extendable <SeqFeatureLocation> made Extendable <SeqFeature> made Describable	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): Changed content of <BibliographicReference> to be (%Describable_content;,Parameter_list?) Added <Parameter_list>	jester as jason_e_stewart	More...				almost 24 years ago
* MAGE-ML.dtd (Repository): Added all <*Map> that were missed Changed <DesignElementGroup> to not be %Identifiable Changed <ReporterGroup> to be %Identifiable Changed <CompositeGroup> to be %Identifiable Changed <FeatureGroup> to be %Describable Added <PresentAbsent> as subclass of StandardQuantitationType Change 'C' and 'F' to 'degrees_C' and 'degrees_F' Moved 'serialNumber' to <HardwareApplication> Moved 'version' and 'releaseDate' to <SoftwareApplication> renamed Contact_reflist to <HardwareManufacture_reflist> and <SoftwareManufacture_reflist>	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): removed the <Dimension_ref> from %BioAssayData_content added the <Dimension_ref> as optional to <BioDataTuples> made <BioAssayTuple> * instead of + in <BioDataTuples>	jester as jason_e_stewart	More...				about 24 years ago
example files	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): Added %StandardQuantitionType_classes and %StandardQuantitionType_ref and %QuantitionType_ref and %QuantitionType_classes now use them Removed <StandardQuantitionType_ref> and <QuantitionType_ref> Changed content of <TargetStandardQuantitationType> and <TargetQuantitationType> to use the right entity	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): Gave %StandardQuantitionType_attrs to <ConfidenceIndicator>	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): changed %ConfidenceIndicator_content from %StandardQuantitationType_content to %QuantitationType_content changed %ConfidenceIndicator_attrs from %StandardQuantitationType_attrs to %QuantitationType_attrs Changed <FactorValue_list> to <FactorValue_reflist> in %BioAssay_content Removed <ExperimentFactor_ref> Made <FactorValue_ref> Removed <ExperimentFactor_ref> from <FactorValue> Defaulted type to "absolute" in <Measurement> Defaulted kindCV to "other" in <Measurement>	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): %BioAssay_content should not have %BioAssayData_ref	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): Made <Unit> subclasses optional for <Measurement> Added <ExperimentalFactor_ref> to <ExperiementalFactor> Defined <ExperimentalFactor_ref>	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): content model for <ConfidenceIndicator_reflist> is now unambiguous content model for <BioDataCube> is now unambiguous	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): Fixed missing _content and _attrs usage for sub-classes	jester as jason_e_stewart	More...				about 24 years ago
* MAGE-ML.dtd (Repository): Added ()'s around Entity refs Added CVS Id keyword	jester as jason_e_stewart	More...				about 24 years ago
fixing up .cvsignore	jester as jason_e_stewart	More...				about 24 years ago

←
1
2
…
27
28
29
30
31
32
33
34
35
→