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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Aug 17, 2024 — Aug 17, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Return of LocationChangeCompletedEvent to keep plugin authors happy.
Eric Smith
More... over 13 years ago
Return of LocationChangeCompletedEvent to keep plugin authors happy.
Eric Smith
More... over 13 years ago
Location field in VariationModule now actually does something.
Eric Smith
More... over 13 years ago
Savant should use system temp dir instead of creating its own inside .savant directory.
Eric Smith
More... over 13 years ago
Interim check-in of Savant 2.0 manual.
Eric Smith
More... over 13 years ago
Interim check-in of Savant 2.0 manual.
Eric Smith
More... over 13 years ago
Read Pair (Standard) now shows mismatches.
Eric Smith
More... over 13 years ago
Fixed blocks in BED tracks. SNP and Strand SNP modes now throw a RenderingException if there is no sequence. Avoid drawing a one-base thick portion for tracks which have no thickness.
Eric Smith
More... over 13 years ago
New, less intrusive way of defaulting RefSeq gene tracks to use alternate names.
Eric Smith
More... over 13 years ago
Tweak to allow BigWig tracks to be loaded from the UCSC Explorer plugin.
Eric Smith
More... over 13 years ago
SQL and UCSC plugins can now handle BigWig (and BAM) tracks stored on UCSC.
Eric Smith
More... over 13 years ago
Some old exceptions specific to the Savant 1.x file-format are now IOExceptions, so that new code doesn't have to know about our history.
Eric Smith
More... over 13 years ago
Added separate filter for reads with unmapped mates.
Eric Smith
More... over 13 years ago
SNP and Strand SNP modes now report the number of Ns.
Eric Smith
More... over 13 years ago
BigWigDataSource was reporting incorrect URI.
Eric Smith
More... over 13 years ago
Initial check-in of 2.0.0 manual edits. BigWigDataSource now works with remote URLs.
Eric Smith
More... over 13 years ago
Updated for 2.0.0-beta SDK.
Eric Smith
More... over 13 years ago
TrackFactory now has capacity to send progress messages which are displayed by the GraphPane while loading.
Eric Smith
More... over 13 years ago
Direct support for Fasta files.
Eric Smith
More... over 13 years ago
Location of VariantPopups was being initialised from mouse position relative to the root component, not the screen.
Eric Smith
More... over 13 years ago
LDPlot popup shows the same variant twice. Some participants in MergedVariantRecords were not correctly displaying heterozygous variants.
Eric Smith
More... over 13 years ago
Title of main window now accurately reflects loading stage of project. Labels in VariantPopups now constrained to 600 pixels.
Eric Smith
More... over 13 years ago
Project now waits for all tracks to be added before sending ProjectEvent.LOAD.
Eric Smith
More... over 13 years ago
Need call to saveNullData to ensure that Zoom message gets drawn.
Eric Smith
More... over 13 years ago
Background for buttonoids should be set to white.
Eric Smith
More... over 13 years ago
Selection not being drawn when shift-dragging.
Eric Smith
More... over 13 years ago
Tabix and BigWig libraries now part of Savant.jar.
Eric Smith
More... over 13 years ago
Integrating latest BigWig support. Tabix and BigWig libraries now part of Savant.jar.
Eric Smith
More... over 13 years ago
Integrating latest BigWig support. Tabix and BigWig libraries now part of Savant.jar.
Eric Smith
More... over 13 years ago
Fighting with svn.
Eric Smith
More... over 13 years ago